BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0459800 Os04g0459800|AK105401
(609 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G39840.1 | chr5:15946769-15949186 FORWARD LENGTH=777 785 0.0
AT4G14790.1 | chr4:8496351-8499829 REVERSE LENGTH=572 404 e-112
>AT5G39840.1 | chr5:15946769-15949186 FORWARD LENGTH=777
Length = 776
Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/557 (66%), Positives = 452/557 (81%), Gaps = 19/557 (3%)
Query: 40 FAEFCVTHLADELRKHESVMAAADLTAPHAWYPFARAMRRRVVYHCGPTNSGKTHNALTR 99
F EFC+ DE+++ +S++ ADLT P W+PFARAM+R++VYHCGPTNSGKT+NAL R
Sbjct: 235 FVEFCIEEFPDEIKRFKSIVDTADLTKPATWFPFARAMKRKIVYHCGPTNSGKTYNALQR 294
Query: 100 FAAAKSGVYCSPLRLLAMEVFDKVNALGVYCSLRTGQEIKEVPFSNHVACTIEMLSTEEP 159
F AK+G+YCSPLRLLAMEVFDKVNALG+YCSL TGQE K VPF+NHV+CT+EM+ST+E
Sbjct: 295 FMEAKNGLYCSPLRLLAMEVFDKVNALGIYCSLLTGQEKKYVPFANHVSCTVEMVSTDEL 354
Query: 160 YEVAVVDEIQMMADPVRGYAWTRAVLGLKADEIHLCGDPSVLKIVRKICADTGDDLEVHQ 219
YEVAV+DEIQMMADP RG+AWT+A+LGLKADEIHLCGDPSVL IVRK+CADTGD+L
Sbjct: 355 YEVAVLDEIQMMADPSRGHAWTKALLGLKADEIHLCGDPSVLDIVRKMCADTGDELVEEH 414
Query: 220 YERFKPLVVEAKTLLGDLKNVRSGDCIVAFSRREIFEVKLAIEKFTKHKCCVIYGALPPE 279
YERFKPLVVEAKTLLG+LKNV+SGDC+VAFSRREIFEVK+AIEK T H+CCVIYGALPPE
Sbjct: 415 YERFKPLVVEAKTLLGELKNVKSGDCVVAFSRREIFEVKMAIEKHTNHRCCVIYGALPPE 474
Query: 280 TRRQQAKLFNEQDNEYDVLVASDAVGMGLNLNIRRVVFYSLAKYNGDRMVPVAASQVKQI 339
TRRQQAKLFN+Q+NEYDVLVASDAVGMGLNLNIRRVVFYSL KYNGD++VPVAASQVKQI
Sbjct: 475 TRRQQAKLFNDQENEYDVLVASDAVGMGLNLNIRRVVFYSLNKYNGDKIVPVAASQVKQI 534
Query: 340 AGRAGRRGSIYPDGXXXXXXXXXXXXXIQCLQQPFEEAKKVGLFPCFEQVESFAIQFPDL 399
AGRAGRRGS YPDG I+CLQQPF+E KVGLFP FEQ+E FA Q PD+
Sbjct: 535 AGRAGRRGSRYPDGLTTTLHLEDLNYLIECLQQPFDEVTKVGLFPFFEQIELFAAQVPDM 594
Query: 400 TFNELLDKFRENCRVDSTYFMCHQESIKKVANMLERIQGLSLKDRYNFCFAPVNIRDPKA 459
F+ LL+ F ++CR+D +YF+C + +KKVANMLE+++GLSL+DR+NFCFAPVNIR+P+A
Sbjct: 595 AFSNLLEHFGKHCRLDGSYFLCRHDHVKKVANMLEKVEGLSLEDRFNFCFAPVNIRNPRA 654
Query: 460 MYHLLRFATNYSQSRRVSIAMGMPKGSAKNDTELLDLETKHQVLSMYLWLSHHFEEDHFP 519
M++L RFA++YSQ+ V++AMG+PK SAK+D +LLDLE++HQ+LSMYLWLS+ FEE+ FP
Sbjct: 655 MHNLYRFASSYSQNMPVNVAMGIPKSSAKSDAQLLDLESRHQILSMYLWLSNQFEEN-FP 713
Query: 520 HVQKAEEMSINIADXXXXXXXXXXWKPTSRQQAKPRRENEEDNDVEQASDDNAKNDSEDG 579
V+K E M+ NIA+ WK S+++ K + + +ED G
Sbjct: 714 FVEKVEAMATNIAELLGESLSKASWKMESKEE-KVKGQMKEDR----------------G 756
Query: 580 YERSISRIKPFMRKRLD 596
YER S IK ++KR D
Sbjct: 757 YERPASLIK-LVKKRKD 772
>AT4G14790.1 | chr4:8496351-8499829 REVERSE LENGTH=572
Length = 571
Score = 404 bits (1037), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/461 (44%), Positives = 289/461 (62%), Gaps = 6/461 (1%)
Query: 62 ADLTAPHAWYPFARAMRRRVVYHCGPTNSGKTHNALTRFAAAKSGVYCSPLRLLAMEVFD 121
DLT PH WYP AR +R+V+ H GPTNSGKT++AL + SGVYC PLRLLA EV
Sbjct: 72 TDLTCPHTWYPIARKKKRKVILHVGPTNSGKTYSALKHLEQSSSGVYCGPLRLLAWEVAK 131
Query: 122 KVNALGVYCSLRTGQEIKEVPFSNHVACTIEMLSTEEPYEVAVVDEIQMMADPVRGYAWT 181
++N V C L TGQE V + H A T+EM Y+ A++DEIQM+ RG+A+T
Sbjct: 132 RLNKANVPCDLITGQEKDLVEGATHKAVTVEMADVTSVYDCAIIDEIQMVGCKQRGFAFT 191
Query: 182 RAVLGLKADEIHLCGDPSVLKIVRKICADTGDDLEVHQYERFKPLVVEAKTLLGDLKNVR 241
RA+LG+ ADE+HLCGDP+V+ +V I TGDD+EVH YER PL V K + + +++
Sbjct: 192 RALLGIAADELHLCGDPAVVPLVEDILKVTGDDVEVHTYERLSPL-VPLKVPVSSVSSIK 250
Query: 242 SGDCIVAFSRREIFEVKLAIEKFTKHKCCVIYGALPPETRRQQAKLFNEQDNEYDVLVAS 301
+GDC+V FSR++I+ K IE+ KH C V+YG+LPPETR QA FN++ N++DVLVAS
Sbjct: 251 TGDCLVTFSRKDIYAYKKTIERAGKHLCSVVYGSLPPETRTAQATRFNDETNDFDVLVAS 310
Query: 302 DAVGMGLNLNIRRVVFYSLAKYNGDRMVPVAASQVKQIAGRAGRRGSIYPDGXXXXXXXX 361
DA+GMGLNLNI R++F +L KY+G + S++KQIAGRAGR S +P G
Sbjct: 311 DAIGMGLNLNISRIIFSTLQKYDGSETRDLTVSEIKQIAGRAGRFQSKFPIGEVTCLHKE 370
Query: 362 XXXXXIQCLQQPFEEAKKVGLFPCFEQVESFAIQFPDLTFNELLDKFRENCRVDSTYFMC 421
L+ P ++ GLFP F+ + ++ P ++L+ F EN ++ S YF+
Sbjct: 371 DLPLLHSSLKSPSPILERAGLFPTFDLLSGYSQAHPTHGLYQILEHFVENAKLSSNYFIS 430
Query: 422 HQESIKKVANMLERIQGLSLKDRYNFCFAPVNIRDPKAMYHLLRFATNYSQSRRVSIAMG 481
+ E + KVA +++ + L L+++Y F +PV++ D + L +FA N+S++ V +
Sbjct: 431 NVEDMMKVAAIVDELP-LGLQEKYLFVVSPVDVNDEISGQGLAQFAQNFSKAGIVRLREI 489
Query: 482 MPKGSA---KNDTELLDLETKHQVLSMYLWLSHHFEEDHFP 519
+ K TEL +LE+ H+VL +Y+WLS ED FP
Sbjct: 490 LAPDRVKVPKTPTELKELESIHKVLDLYVWLSLRL-EDSFP 529
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.135 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,959,047
Number of extensions: 474383
Number of successful extensions: 1857
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1852
Number of HSP's successfully gapped: 2
Length of query: 609
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 505
Effective length of database: 8,255,305
Effective search space: 4168929025
Effective search space used: 4168929025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 115 (48.9 bits)