BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0450600 Os04g0450600|J075014K11
(189 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0450600 Conserved hypothetical protein 340 3e-94
Os08g0483600 Conserved hypothetical protein 100 5e-22
Os09g0468900 Conserved hypothetical protein 99 1e-21
>Os04g0450600 Conserved hypothetical protein
Length = 189
Score = 340 bits (873), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 176/189 (93%), Positives = 176/189 (93%)
Query: 1 VACKGLALCAPAIAQRHRNTPLSASAHRRQILITGLTMNSSGINSALPVRGAAQIXXXXX 60
VACKGLALCAPAIAQRHRNTPLSASAHRRQILITGLTMNSSGINSALPVRGAAQI
Sbjct: 1 VACKGLALCAPAIAQRHRNTPLSASAHRRQILITGLTMNSSGINSALPVRGAAQIPAVGS 60
Query: 61 XXXXXXXXNLPVPSMPSWAKWVVGAIIVAIPIYRKIRALEDTVEKTAEVAIEVVDTVAEA 120
NLPVPSMPSWAKWVVGAIIVAIPIYRKIRALEDTVEKTAEVAIEVVDTVAEA
Sbjct: 61 GPPAPSGGNLPVPSMPSWAKWVVGAIIVAIPIYRKIRALEDTVEKTAEVAIEVVDTVAEA 120
Query: 121 TEKVAGELADAFPGNENLKEVASKIKTVADVIEDDAEKAEALIQKVDEIKKELDAIVDPI 180
TEKVAGELADAFPGNENLKEVASKIKTVADVIEDDAEKAEALIQKVDEIKKELDAIVDPI
Sbjct: 121 TEKVAGELADAFPGNENLKEVASKIKTVADVIEDDAEKAEALIQKVDEIKKELDAIVDPI 180
Query: 181 IDKIDKEEL 189
IDKIDKEEL
Sbjct: 181 IDKIDKEEL 189
>Os08g0483600 Conserved hypothetical protein
Length = 191
Score = 100 bits (250), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 79/115 (68%), Gaps = 1/115 (0%)
Query: 74 SMPSWAKWVVGAII-VAIPIYRKIRALEDTVEKTAEVAIEVVDTVAEATEKVAGELADAF 132
++P+WA+WV+G ++ +P Y + R +ED + E A EVV+ +AE TEK+A +AD
Sbjct: 63 TIPTWARWVIGGVLHTVVPFYERARYVEDETARNVETAAEVVEQIAEVTEKLASNVADHL 122
Query: 133 PGNENLKEVASKIKTVADVIEDDAEKAEALIQKVDEIKKELDAIVDPIIDKIDKE 187
P N L++V KI+ +A+V+++DAEK EA+ +K++ ++DA V+PI +I+KE
Sbjct: 123 PENGCLQKVVEKIEYIAEVVDEDAEKVEAITEKIENFSDKIDAKVEPIFTEIEKE 177
>Os09g0468900 Conserved hypothetical protein
Length = 189
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 94/155 (60%), Gaps = 6/155 (3%)
Query: 39 NSSGINSALPVRGAAQIXXXXXXXXXXXXXNL-----PVPSMPSWAKWVVGAII-VAIPI 92
+SSGI+S V G + I + P+P +P W + V+G ++ A+P
Sbjct: 32 DSSGIDSGWVVLGKSDIVPADLAAAAADAGHRQLGFSPLPMLPIWVQMVLGGVVYTAVPF 91
Query: 93 YRKIRALEDTVEKTAEVAIEVVDTVAEATEKVAGELADAFPGNENLKEVASKIKTVADVI 152
Y + R ED V K E A+EVV+ AE TEK+A +A+A P N L ++A +++ +A+++
Sbjct: 92 YNRARKAEDEVTKNVETALEVVEHAAEVTEKLAANVANALPENGTLHKLAEEVEYIAEIV 151
Query: 153 EDDAEKAEALIQKVDEIKKELDAIVDPIIDKIDKE 187
+ DA+K E +I+K++++ +DA V+P+I++++KE
Sbjct: 152 DKDAQKVEIIIKKIEDVSNRIDAAVEPVIEELEKE 186
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.130 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,344,736
Number of extensions: 177877
Number of successful extensions: 695
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 694
Number of HSP's successfully gapped: 3
Length of query: 189
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 94
Effective length of database: 12,075,471
Effective search space: 1135094274
Effective search space used: 1135094274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 153 (63.5 bits)