BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0450100 Os04g0450100|AK069194
(245 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0450100 Uncharacterised conserved protein UCP005389 fa... 461 e-130
Os07g0687100 Uncharacterised conserved protein UCP005389 fa... 230 6e-61
>Os04g0450100 Uncharacterised conserved protein UCP005389 family protein
Length = 245
Score = 461 bits (1186), Expect = e-130, Method: Compositional matrix adjust.
Identities = 226/245 (92%), Positives = 226/245 (92%)
Query: 1 MGSLXXXXXXXXXXXXXXXXXXXFLCLHGFRTSGEIMRKQVVGKWPADVTARLDLVFADA 60
MGSL FLCLHGFRTSGEIMRKQVVGKWPADVTARLDLVFADA
Sbjct: 1 MGSLGGEEGARPAAAAEGARRPRFLCLHGFRTSGEIMRKQVVGKWPADVTARLDLVFADA 60
Query: 61 PFPAEGKSDVEGIFDPPYYEWFQFDKNFTEYRNFDECLNYIEELMIKEGPFDGLMGFSQG 120
PFPAEGKSDVEGIFDPPYYEWFQFDKNFTEYRNFDECLNYIEELMIKEGPFDGLMGFSQG
Sbjct: 61 PFPAEGKSDVEGIFDPPYYEWFQFDKNFTEYRNFDECLNYIEELMIKEGPFDGLMGFSQG 120
Query: 121 SILSGALPGLQEQGLALTRVPKIKYLIIIGGAKFQSPTVAEKAYANNIKCPSVHFLGDTD 180
SILSGALPGLQEQGLALTRVPKIKYLIIIGGAKFQSPTVAEKAYANNIKCPSVHFLGDTD
Sbjct: 121 SILSGALPGLQEQGLALTRVPKIKYLIIIGGAKFQSPTVAEKAYANNIKCPSVHFLGDTD 180
Query: 181 FLKTHGEKLIESYVDPFIIRHPKGHTVPRLDEKSLEIMLRFLDKIEKETALEHSSTDVDE 240
FLKTHGEKLIESYVDPFIIRHPKGHTVPRLDEKSLEIMLRFLDKIEKETALEHSSTDVDE
Sbjct: 181 FLKTHGEKLIESYVDPFIIRHPKGHTVPRLDEKSLEIMLRFLDKIEKETALEHSSTDVDE 240
Query: 241 KEMYL 245
KEMYL
Sbjct: 241 KEMYL 245
>Os07g0687100 Uncharacterised conserved protein UCP005389 family protein
Length = 245
Score = 230 bits (587), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 107/201 (53%), Positives = 144/201 (71%), Gaps = 3/201 (1%)
Query: 25 LCLHGFRTSGEIMRKQVVGKWPADVTARLDLVFADAPFPAEGKSDVEGIFDPPYYEWFQF 84
LCLHGFRTSG ++KQ+ KW + + D+VF D FPA GKS++EGIF PPY+EWFQF
Sbjct: 10 LCLHGFRTSGSFLKKQI-SKWNPSIFQQFDMVFPDGIFPAGGKSEIEGIFPPPYFEWFQF 68
Query: 85 DKNFTEYRNFDECLNYIEELMIKEGPFDGLMGFSQGSILSGALPGLQEQGLALTRVPKIK 144
+K+FTEY N DEC++Y+ + M+K GPFDGL+GFSQG+ LS L G Q QG L P IK
Sbjct: 69 NKDFTEYTNLDECISYLCDYMVKNGPFDGLLGFSQGATLS--LIGYQAQGKVLNDHPPIK 126
Query: 145 YLIIIGGAKFQSPTVAEKAYANNIKCPSVHFLGDTDFLKTHGEKLIESYVDPFIIRHPKG 204
+++ I G+KF+ P++ AY + IK SVHF+G+ D+LK E+L ++ DP IIRHP+G
Sbjct: 127 FMVSIAGSKFRDPSICNVAYKDPIKVKSVHFIGEKDWLKVPSEELAAAFEDPVIIRHPQG 186
Query: 205 HTVPRLDEKSLEIMLRFLDKI 225
HTVPRLDE S++ + + I
Sbjct: 187 HTVPRLDEASVKQLSEWSSSI 207
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.141 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,108,446
Number of extensions: 351121
Number of successful extensions: 620
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 618
Number of HSP's successfully gapped: 2
Length of query: 245
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 147
Effective length of database: 11,918,829
Effective search space: 1752067863
Effective search space used: 1752067863
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)