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Os07g0687100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Uncharacterised conserved protein UCP005389 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.19 (0.0638) R2 : 0.537
β1 : -4.6 (0.25) R2dD : 0.443 R2D : 0.236
β2 : 0.934 (0.172) R2dC : 0.0349 R2C : 0.0576
β3 : 4.06 (0.457) R2dE : 0.25 R2E : 0.0886
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -9.41 (2.65) R2dD*E : 0.0392 R2D*E : -0.186
γ1 : -0.789 (0.132) R2dN8 : 0.0495 R2N8 : 0.0105
σ : 1.15
deviance : 605.57
__
_____
C
peak time of C : 6.51
E
wheather : wind
threshold : 0.8739
memory length : 284
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4.05
open length of G : 1.04

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
605.61 1.16 8.19 -4.6 0.929 4.02 0.21 -9.36 -0.786 6.41 0.8826 263 4.05 1.06
634.15 1.17 8.12 -4.35 0.96 4.19 0.267 -- -0.797 6.3 0.7376 130 4.18 0.923
605.57 1.15 8.19 -4.6 0.934 4.06 -- -9.41 -0.789 6.51 0.8739 284 4.05 1.04
627.08 1.17 8.12 -4.13 0.995 3.63 -- -- -0.801 6.16 0.8 162 4.2 1.23
643.65 1.18 8.19 -4.62 -- 4.61 -- -9.36 -0.728 -- 0.8877 271 4.03 1.08
745.29 1.28 8.15 -3.98 1.59 -- 1.32 -- -0.976 5.95 -- -- -- --
749.09 1.28 8.15 -3.97 1.6 -- -- -- -0.98 6.15 -- -- -- --
662.96 1.2 8.13 -4.21 -- 3.56 -- -- -0.749 -- 0.8875 178 4.18 1.26
1081.3 1.53 8.03 -- 0.925 2.75 -- -- -0.347 5.91 0.8089 169 4.1 1.28
881.44 1.39 8.18 -3.92 -- -- -- -- -0.945 -- -- -- -- --
1164.04 1.6 8.05 -- 1.54 -- -- -- -0.538 6.29 -- -- -- --
1125.41 1.56 8.04 -- -- 3.07 -- -- -0.313 -- 0.9754 176 4.11 1.28
1287.43 1.67 8.08 -- -- -- -- -- -0.509 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 612.44 wind 1.0 270 < th dose independent rect. 4 1
2 612.95 wind 1.0 270 < th dose dependent rect. 4 1
5 634.00 temperature 10.0 90 > th dose dependent rect. 7 20
6 634.64 temperature 30.0 720 > th dose dependent rect. 18 1
23 638.50 temperature 10.0 90 > th dose dependent rect. 9 18
24 638.92 wind 3.0 90 < th dose dependent rect. 3 4
43 640.50 atmosphere 1005.0 270 > th dose independent rect. 1 6
44 640.55 temperature 10.0 270 > th dose dependent rect. 6 8
47 641.50 atmosphere 1005.0 270 > th dose independent rect. 2 4
49 641.81 atmosphere 1005.0 90 > th dose independent rect. 3 6
59 644.10 temperature 10.0 10 > th dose dependent rect. 9 19
61 644.53 humidity 50.0 1440 < th dose independent rect. 16 1
62 644.60 temperature 15.0 90 > th dose dependent rect. 3 4
64 645.04 humidity 50.0 1440 < th dose dependent rect. 16 1
70 645.40 temperature 20.0 90 > th dose independent rect. 4 1
79 646.89 humidity 90.0 90 > th dose dependent rect. 4 1
81 647.08 temperature 15.0 270 > th dose dependent rect. 3 2
98 648.65 temperature 15.0 270 > th dose dependent rect. 1 5
105 649.13 temperature 25.0 90 < th dose independent rect. 4 1
113 649.64 humidity 90.0 90 > th dose independent rect. 4 1
128 650.78 humidity 80.0 720 < th dose dependent rect. 20 1
129 650.91 humidity 80.0 720 < th dose dependent rect. 19 3
144 651.83 temperature 25.0 270 < th dose independent rect. 2 3
157 652.53 temperature 20.0 270 > th dose independent rect. 6 8
174 653.20 precipitation 0.1 270 < th dose independent rect. 5 21
175 653.20 precipitation 0.1 270 < th dose dependent rect. 5 21
176 653.21 precipitation 0.1 90 < th dose independent rect. 9 18
177 653.21 precipitation 0.1 90 < th dose dependent rect. 9 18
178 653.27 precipitation 0.1 90 < th dose independent rect. 7 20
179 653.27 precipitation 0.1 90 < th dose dependent rect. 7 20
186 653.46 humidity 80.0 720 < th dose dependent rect. 18 14
191 654.02 temperature 20.0 30 > th dose independent rect. 4 3
195 654.13 humidity 50.0 270 > th dose independent rect. 6 8
196 654.16 radiation 30.0 270 < th dose independent rect. 14 16
197 654.17 wind 1.0 90 < th dose independent rect. 4 7
205 654.48 wind 5.0 270 < th dose independent rect. 2 3
213 654.85 wind 7.0 270 < th dose dependent rect. 1 5
219 654.95 wind 5.0 270 < th dose independent rect. 1 5
224 655.23 humidity 50.0 1440 > th dose independent rect. 16 1
225 655.26 precipitation 0.1 270 < th dose independent rect. 2 3
226 655.26 precipitation 0.1 270 < th dose dependent rect. 2 3
231 655.37 wind 9.0 270 < th dose independent rect. 5 21
232 655.41 wind 7.0 270 < th dose independent rect. 6 8
236 655.58 radiation 40.0 270 < th dose dependent rect. 14 16
237 655.64 temperature 25.0 90 < th dose independent rect. 3 18
248 656.06 wind 1.0 270 > th dose independent rect. 3 1
249 656.06 wind 5.0 90 < th dose independent rect. 3 6
256 656.24 humidity 50.0 270 > th dose independent rect. 14 16
265 656.35 wind 7.0 270 < th dose independent rect. 7 18
275 656.51 precipitation 0.1 270 < th dose independent rect. 1 5
276 656.51 precipitation 0.1 270 < th dose dependent rect. 1 5
286 656.73 humidity 50.0 90 > th dose dependent rect. 3 6
287 656.75 precipitation 0.1 270 < th dose independent rect. 18 8
288 656.75 precipitation 0.1 270 < th dose dependent rect. 18 8
297 656.99 wind 9.0 90 < th dose independent rect. 9 18
299 657.01 precipitation 0.1 90 < th dose independent rect. 3 6
300 657.01 precipitation 0.1 90 < th dose dependent rect. 3 6
316 657.32 temperature 10.0 90 > th dose dependent rect. 3 6
326 657.48 atmosphere 1015.0 90 < th dose dependent rect. 4 1
334 657.60 temperature 10.0 10 > th dose dependent rect. 7 9
345 657.83 radiation 1.0 270 < th dose independent rect. 1 17
346 657.83 radiation 1.0 270 < th dose dependent rect. 2 3
350 657.95 temperature 25.0 270 < th dose independent rect. 1 5
357 658.06 wind 9.0 10 < th dose dependent rect. 4 16
359 658.07 temperature 10.0 270 > th dose independent rect. 2 3
362 658.07 humidity 50.0 270 > th dose independent rect. 2 3
365 658.07 atmosphere 995.0 270 > th dose independent rect. 2 3
366 658.07 atmosphere 1010.0 270 < th dose independent rect. 2 3
368 658.07 radiation 20.0 270 < th dose independent rect. 2 3
371 658.07 temperature 10.0 270 > th dose independent rect. 5 21
372 658.09 radiation 40.0 270 < th dose dependent rect. 2 3
376 658.11 wind 1.0 90 < th dose dependent rect. 4 14
381 658.17 precipitation 0.1 270 < th dose independent rect. 6 8
382 658.17 precipitation 0.1 270 < th dose dependent rect. 6 8
384 658.20 radiation 1.0 270 < th dose independent rect. 2 3
389 658.23 humidity 50.0 270 > th dose dependent rect. 2 3
396 658.40 temperature 10.0 90 > th dose independent rect. 3 6
398 658.40 humidity 50.0 90 > th dose independent rect. 3 6
399 658.40 atmosphere 995.0 90 > th dose independent rect. 3 6
400 658.40 atmosphere 1015.0 90 < th dose independent rect. 3 6
401 658.40 temperature 10.0 90 > th dose independent rect. 9 18
419 658.64 radiation 40.0 90 < th dose dependent rect. 3 6
420 658.65 radiation 40.0 90 < th dose independent rect. 3 6
426 658.79 temperature 10.0 270 > th dose independent rect. 6 8
427 658.79 atmosphere 995.0 270 > th dose independent rect. 6 8
428 658.79 atmosphere 1015.0 270 < th dose independent rect. 6 8
429 658.79 temperature 10.0 270 > th dose independent rect. 14 16
438 658.96 temperature 10.0 270 > th dose independent rect. 1 5
441 658.96 humidity 50.0 270 > th dose independent rect. 1 5
444 658.96 atmosphere 995.0 270 > th dose independent rect. 1 5
445 658.96 atmosphere 1015.0 270 < th dose independent rect. 1 5
446 658.96 radiation 20.0 270 < th dose independent rect. 1 5
449 658.96 temperature 10.0 270 > th dose independent rect. 6 19
464 659.02 humidity 80.0 720 < th dose independent rect. 20 1
469 659.09 humidity 80.0 720 < th dose independent rect. 19 3
502 659.48 radiation 1.0 30 < th dose dependent rect. 20 8
507 659.50 temperature 10.0 30 > th dose independent rect. 20 8
508 659.50 temperature 30.0 30 < th dose independent rect. 20 8
509 659.50 humidity 50.0 30 > th dose independent rect. 20 8
512 659.50 atmosphere 995.0 30 > th dose independent rect. 20 8
513 659.50 radiation 1.0 30 < th dose independent rect. 20 8
518 659.50 temperature 10.0 30 > th dose independent rect. 4 16
520 659.50 atmosphere 1015.0 30 < th dose independent rect. 4 16
526 659.59 atmosphere 995.0 270 > th dose independent rect. 18 8
528 659.62 wind 9.0 30 < th dose independent rect. 20 8
535 659.68 radiation 40.0 270 < th dose dependent rect. 1 6
540 659.72 temperature 25.0 270 < th dose independent rect. 1 18
541 659.73 temperature 10.0 270 > th dose independent rect. 18 8
542 659.73 humidity 50.0 270 > th dose independent rect. 18 8
543 659.73 radiation 20.0 270 < th dose independent rect. 18 8
546 659.73 temperature 10.0 270 > th dose independent rect. 2 16
547 659.73 atmosphere 1015.0 270 < th dose independent rect. 2 16
570 659.83 radiation 1.0 270 < th dose dependent rect. 2 16
576 659.92 radiation 40.0 270 < th dose dependent rect. 18 8
577 659.93 temperature 30.0 90 < th dose independent rect. 3 6
583 659.99 wind 9.0 30 < th dose independent rect. 4 16
585 660.00 wind 9.0 270 < th dose independent rect. 18 8
597 660.16 radiation 20.0 90 < th dose independent rect. 3 6
601 660.17 temperature 30.0 270 < th dose independent rect. 19 7
611 660.17 radiation 1.0 270 < th dose dependent rect. 19 7
628 660.24 humidity 50.0 270 > th dose dependent rect. 1 5
658 660.61 temperature 30.0 720 > th dose independent rect. 18 1
679 660.67 radiation 1.0 270 < th dose dependent rect. 1 18
693 661.01 wind 9.0 270 < th dose independent rect. 14 16
700 661.15 precipitation 0.1 270 < th dose independent rect. 2 16
702 661.15 precipitation 0.1 270 < th dose dependent rect. 2 16
718 661.49 temperature 10.0 270 > th dose dependent rect. 19 6
750 662.04 wind 1.0 270 > th dose independent rect. 7 18
766 662.30 radiation 10.0 10 < th dose independent rect. 4 18
768 662.37 humidity 70.0 720 < th dose independent rect. 18 15
833 662.71 atmosphere 995.0 30 > th dose dependent rect. 4 16
840 662.79 humidity 50.0 30 > th dose dependent rect. 20 8
849 662.87 wind 1.0 30 > th dose independent sin 4 NA
964 663.86 wind 9.0 270 < th dose independent rect. 2 16
979 663.99 radiation 10.0 10 < th dose independent rect. 4 16
986 664.12 atmosphere 995.0 270 > th dose dependent rect. 1 6
988 664.13 atmosphere 995.0 30 > th dose independent rect. 4 16