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Os04g0450100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Uncharacterised conserved protein UCP005389 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.3 (0.0233) R2 : 0.89
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.47 (0.0608) R2dC : 0.787 R2C : 0.775
β3 : -1.71 (0.0795) R2dE : 0.116 R2E : 0.0948
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.157 (0.0493) R2dN8 : 0.00297 R2N8 : -0.00321
σ : 0.436
deviance : 87.45
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C
peak time of C : 5.97
E
wheather : temperature
threshold : 1.66
memory length : 310
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 13.1
open length of G : 18.9

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
83.55 0.429 13.3 -0.148 3.43 -1.47 0.913 -1.43 0.125 6.14 8.367 266 14 18.1
86.4 0.433 13.3 -0.0152 3.45 -1.4 1.02 -- 0.159 6.18 7.167 256 13.9 18.1
84.46 0.428 13.3 -0.0525 3.45 -1.67 -- -1.38 0.138 6.01 3.727 323 13 18.8
87.56 0.436 13.3 0.00254 3.43 -1.75 -- -- 0.163 5.99 2.816 309 13.1 18.9
471.49 1.01 13 0.476 -- -4.47 -- 0.579 0.54 -- 24.29 305 13.4 17.5
118.92 0.511 13.3 -0.172 3.56 -- 1.52 -- 0.00417 6.99 -- -- -- --
124.87 0.523 13.3 -0.145 3.57 -- -- -- -6.5e-05 6.96 -- -- -- --
415.23 0.949 13.3 0.498 -- -4.15 -- -- 0.334 -- 24.2 328 12.5 17.2
87.45 0.436 13.3 -- 3.47 -1.71 -- -- 0.157 5.97 1.66 310 13.1 18.9
793.71 1.32 13.4 -0.0712 -- -- -- -- 0.0664 -- -- -- -- --
125.42 0.524 13.3 -- 3.57 -- -- -- 0.0161 6.96 -- -- -- --
209.58 0.674 13.5 -- -- -4.74 -- -- -0.273 -- 15.19 304 11.2 11.5
793.84 1.32 13.4 -- -- -- -- -- 0.0743 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 84.06 temperature 10.0 270 > th dose dependent rect. 14 18
5 86.45 wind 9.0 270 < th dose independent rect. 14 18
10 87.16 radiation 1.0 270 > th dose independent rect. 8 6
12 87.29 precipitation 0.1 270 < th dose independent rect. 8 6
13 87.29 precipitation 0.1 270 < th dose dependent rect. 8 6
15 87.43 temperature 10.0 270 > th dose independent rect. 8 6
16 87.43 atmosphere 995.0 270 > th dose independent rect. 8 6
17 87.43 atmosphere 1015.0 270 < th dose independent rect. 8 6
18 87.43 temperature 10.0 270 > th dose independent rect. 14 18
19 87.45 radiation 40.0 270 < th dose independent rect. 14 18
22 87.69 wind 9.0 270 < th dose independent rect. 8 6
24 87.95 temperature 20.0 270 > th dose independent rect. 13 19
38 88.33 temperature 20.0 270 > th dose independent rect. 13 6
42 88.59 wind 1.0 270 > th dose independent rect. 19 9
47 88.81 precipitation 0.1 270 < th dose independent rect. 14 18
48 88.81 precipitation 0.1 270 < th dose dependent rect. 14 18
54 89.11 atmosphere 1015.0 270 < th dose independent rect. 14 18
55 89.13 temperature 10.0 10 > th dose dependent rect. 16 18
56 89.15 wind 9.0 270 < th dose independent rect. 13 6
57 89.15 temperature 10.0 270 > th dose dependent rect. 13 7
63 89.20 wind 1.0 270 > th dose independent rect. 8 6
69 89.32 atmosphere 995.0 270 > th dose dependent rect. 8 6
71 89.34 wind 9.0 270 < th dose independent rect. 3 16
84 89.53 wind 1.0 270 > th dose independent rect. 19 18
86 89.54 atmosphere 995.0 270 > th dose dependent rect. 9 4
102 89.78 precipitation 0.1 270 < th dose independent rect. 19 18
103 89.78 precipitation 0.1 270 < th dose dependent rect. 19 18
113 90.08 humidity 50.0 270 > th dose independent rect. 8 6
130 90.43 temperature 10.0 270 > th dose independent rect. 13 6
132 90.43 atmosphere 1010.0 270 < th dose independent rect. 13 6
134 90.43 temperature 10.0 270 > th dose independent rect. 19 18
135 90.43 atmosphere 995.0 270 > th dose independent rect. 19 18
137 90.47 radiation 1.0 270 < th dose independent rect. 17 10
138 90.49 atmosphere 995.0 270 > th dose independent rect. 18 9
139 90.51 precipitation 0.1 270 < th dose independent rect. 13 6
143 90.51 precipitation 0.1 270 < th dose dependent rect. 13 6
152 90.65 radiation 1.0 270 < th dose independent sin 14 NA
153 90.68 humidity 90.0 270 < th dose independent rect. 13 6
156 90.71 temperature 10.0 270 > th dose independent rect. 19 8
157 90.71 temperature 30.0 270 < th dose independent rect. 19 8
158 90.71 humidity 50.0 270 > th dose independent rect. 19 8
160 90.71 radiation 1.0 270 < th dose independent rect. 19 8
165 90.71 temperature 10.0 270 > th dose independent rect. 3 16
166 90.71 atmosphere 1015.0 270 < th dose independent rect. 3 16
167 90.71 radiation 1.0 270 < th dose dependent rect. 19 8
178 90.78 wind 9.0 270 < th dose independent rect. 19 18
185 90.80 radiation 1.0 270 < th dose dependent rect. 17 10
193 90.85 radiation 1.0 270 < th dose dependent sin 14 NA
194 90.87 wind 9.0 270 < th dose independent rect. 19 8
201 90.92 wind 1.0 270 > th dose independent rect. 13 6
241 91.23 precipitation 0.1 270 < th dose independent rect. 19 8
242 91.23 precipitation 0.1 270 < th dose dependent rect. 19 8
262 91.42 radiation 1.0 270 > th dose independent rect. 13 19
267 91.49 temperature 10.0 270 > th dose dependent rect. 13 10
274 91.59 temperature 30.0 270 < th dose independent rect. 8 5
293 91.60 radiation 1.0 270 > th dose independent rect. 14 17
313 91.72 atmosphere 995.0 270 > th dose independent rect. 14 18
323 91.82 humidity 50.0 270 > th dose independent rect. 19 18
329 91.86 precipitation 0.1 270 < th dose independent rect. 3 16
330 91.86 precipitation 0.1 270 < th dose dependent rect. 3 16
348 92.01 humidity 50.0 270 > th dose independent rect. 14 18
371 92.14 temperature 20.0 270 > th dose independent rect. 15 2
378 92.20 temperature 30.0 270 < th dose dependent rect. 8 18
399 92.32 radiation 1.0 270 > th dose independent sin 14 NA
400 92.32 humidity 90.0 270 < th dose independent rect. 15 2
458 92.61 atmosphere 995.0 10 > th dose dependent rect. 10 6
464 92.64 wind 9.0 270 < th dose independent rect. 15 2
485 92.76 temperature 10.0 270 > th dose dependent rect. 3 16
494 92.83 wind 9.0 90 < th dose dependent rect. 15 19
498 92.87 temperature 30.0 270 < th dose independent rect. 19 18
501 92.91 humidity 90.0 90 < th dose independent rect. 10 5
503 92.93 temperature 20.0 10 > th dose independent rect. 15 19
508 92.94 temperature 10.0 270 > th dose dependent rect. 15 2
539 93.11 humidity 50.0 10 > th dose independent rect. 15 19
552 93.15 precipitation 0.1 270 < th dose independent rect. 17 22
554 93.15 precipitation 0.1 270 < th dose dependent rect. 17 22
571 93.27 radiation 40.0 270 < th dose independent rect. 14 5
579 93.33 humidity 50.0 270 > th dose independent rect. 13 6
583 93.34 atmosphere 995.0 270 > th dose independent rect. 13 6
590 93.38 atmosphere 995.0 270 > th dose dependent rect. 19 18
594 93.41 humidity 90.0 270 < th dose independent rect. 10 2
599 93.46 radiation 1.0 10 > th dose independent rect. 10 5
605 93.49 temperature 10.0 10 > th dose independent rect. 10 6
607 93.49 atmosphere 1015.0 10 < th dose independent rect. 10 6
608 93.49 precipitation 0.1 10 < th dose independent rect. 10 6
610 93.49 temperature 10.0 10 > th dose independent rect. 16 18
611 93.49 precipitation 0.1 10 < th dose dependent rect. 10 6
636 93.61 atmosphere 1015.0 10 < th dose independent rect. 16 18
637 93.61 atmosphere 1015.0 270 < th dose dependent rect. 1 7
667 93.69 wind 9.0 10 < th dose independent rect. 10 6
678 93.74 atmosphere 995.0 10 > th dose independent rect. 10 5
684 93.75 temperature 10.0 270 > th dose independent rect. 15 2
686 93.75 atmosphere 1010.0 270 < th dose independent rect. 15 2
690 93.75 temperature 10.0 270 > th dose independent rect. 17 22
691 93.75 atmosphere 995.0 270 > th dose independent rect. 17 22
697 93.77 temperature 20.0 10 > th dose independent rect. 15 5
715 93.85 atmosphere 1015.0 270 < th dose dependent rect. 13 6
718 93.88 wind 1.0 270 > th dose independent rect. 15 2
722 93.89 atmosphere 1015.0 270 < th dose dependent rect. 2 17
760 93.95 precipitation 0.1 270 < th dose independent rect. 15 2
762 93.95 precipitation 0.1 270 < th dose dependent rect. 15 2
765 93.96 radiation 40.0 270 < th dose independent rect. 8 6
789 94.05 atmosphere 995.0 10 > th dose independent rect. 16 18
820 94.11 humidity 50.0 270 > th dose dependent rect. 22 10
821 94.13 radiation 40.0 270 < th dose independent rect. 15 2
824 94.13 wind 1.0 270 > th dose independent rect. 9 16
863 94.24 radiation 10.0 10 < th dose dependent rect. 20 11
874 94.27 radiation 1.0 270 > th dose dependent rect. 15 16
888 94.32 humidity 60.0 270 > th dose independent rect. 1 8
891 94.35 temperature 10.0 1440 > th dose independent rect. 11 5
897 94.35 temperature 10.0 1440 > th dose independent rect. 16 19
960 94.48 humidity 60.0 270 > th dose independent rect. 23 10
973 94.52 radiation 40.0 270 < th dose independent rect. 1 7
977 94.53 wind 9.0 270 < th dose independent rect. 1 7
978 94.53 temperature 10.0 270 > th dose independent rect. 1 7
981 94.53 temperature 30.0 270 < th dose independent rect. 1 7
984 94.53 atmosphere 995.0 270 > th dose independent rect. 1 7
985 94.53 atmosphere 1015.0 270 < th dose independent rect. 1 7
988 94.53 temperature 10.0 270 > th dose independent rect. 8 17