BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0439400 Os04g0439400|AK101745
         (287 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0439400  DDT domain containing protein                       591   e-169
Os02g0556900  DDT domain containing protein                       331   4e-91

>Os04g0439400 DDT domain containing protein
          Length = 287

 Score =  591 bits (1524), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 287/287 (100%), Positives = 287/287 (100%)

Query: 1   GSAGLRASCCREGSTVAKRVNSACSTYDSIHILQEDFFEGLELNGRKDGSVSACKILKVI 60
           GSAGLRASCCREGSTVAKRVNSACSTYDSIHILQEDFFEGLELNGRKDGSVSACKILKVI
Sbjct: 1   GSAGLRASCCREGSTVAKRVNSACSTYDSIHILQEDFFEGLELNGRKDGSVSACKILKVI 60

Query: 61  IGSGNTKMYEVGWIGQDNAETNTSVLQADDLVIRKKARASRSMLKIYIRESTSQNSPWII 120
           IGSGNTKMYEVGWIGQDNAETNTSVLQADDLVIRKKARASRSMLKIYIRESTSQNSPWII
Sbjct: 61  IGSGNTKMYEVGWIGQDNAETNTSVLQADDLVIRKKARASRSMLKIYIRESTSQNSPWII 120

Query: 121 HANLAKKYGIPTEPPKDLLNGQGLPKLRRGLENGTTDDVRKKLKKGEPIDDLLLRPTADD 180
           HANLAKKYGIPTEPPKDLLNGQGLPKLRRGLENGTTDDVRKKLKKGEPIDDLLLRPTADD
Sbjct: 121 HANLAKKYGIPTEPPKDLLNGQGLPKLRRGLENGTTDDVRKKLKKGEPIDDLLLRPTADD 180

Query: 181 PSLSKRRPLSTDFRVPVDSVGDLLMVWDFCMTYGRILCLSPFSLSDLENAICHKESNLVL 240
           PSLSKRRPLSTDFRVPVDSVGDLLMVWDFCMTYGRILCLSPFSLSDLENAICHKESNLVL
Sbjct: 181 PSLSKRRPLSTDFRVPVDSVGDLLMVWDFCMTYGRILCLSPFSLSDLENAICHKESNLVL 240

Query: 241 LVELHAALFHLLIKDGGGYFMFLQNKRRKLKVTLVTWAEYLCDFLEM 287
           LVELHAALFHLLIKDGGGYFMFLQNKRRKLKVTLVTWAEYLCDFLEM
Sbjct: 241 LVELHAALFHLLIKDGGGYFMFLQNKRRKLKVTLVTWAEYLCDFLEM 287



>Os02g0556900 DDT domain containing protein
          Length = 617

 Score =  331 bits (848), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 165/265 (62%), Positives = 205/265 (77%), Gaps = 13/265 (4%)

Query: 33  LQEDFFEGLELNGRKDGSVSACKILKVIIGSGNTKMYEVGWIGQDNAETNTSVLQADDLV 92
           LQE  FEGLEL  ++DG  +AC+ILK I+GS  TKMYEVGW+ +D    +TSV++ +DL+
Sbjct: 111 LQEAVFEGLELYAKQDGLEAACRILK-ILGSDGTKMYEVGWLLRDKTIISTSVIKGEDLI 169

Query: 93  IRKKARASRSMLKIYIRESTSQNSPWIIHANLAKKYGIPTEPPKDLLNGQGLPKL-RRGL 151
            R+    SR+ LKI+IR++TSQN+PW+IH NLAK+YGIP EPP D++ G+GL K  R+  
Sbjct: 170 HRRPP-VSRNTLKIFIRDATSQNAPWVIHENLAKRYGIPIEPPNDMMFGEGLQKKGRKRR 228

Query: 152 ENGTTDDVRKKLKKGE---------PIDDLLLRPTADDPSLSKRRPLSTDFRVPVDSVGD 202
           E+G   D +KK+K  E         PIDDLL++P+ADD +L KR PL+TDFRVP  SVGD
Sbjct: 229 EDGPMGDPKKKMKNDEEHINVPIKYPIDDLLVQPSADDHALLKRPPLATDFRVPKYSVGD 288

Query: 203 LLMVWDFCMTYGRILCLSPFSLSDLENAICHKESNLVLLVELHAALFHLLIKDGGGYFMF 262
           LLMVWDFC+++GR+L LSPFSL DLENAICHKESN  LLVE+H A+FHLLIKD G YF  
Sbjct: 289 LLMVWDFCLSFGRVLNLSPFSLVDLENAICHKESN-ALLVEIHTAIFHLLIKDEGDYFTI 347

Query: 263 LQNKRRKLKVTLVTWAEYLCDFLEM 287
           L+ K+RKLKVTLVTWAEYLCDFLEM
Sbjct: 348 LRTKKRKLKVTLVTWAEYLCDFLEM 372



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,448,329
Number of extensions: 449253
Number of successful extensions: 993
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 988
Number of HSP's successfully gapped: 2
Length of query: 287
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 187
Effective length of database: 11,814,401
Effective search space: 2209292987
Effective search space used: 2209292987
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)