Os02g0556900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DDT domain containing protein.
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Os02g0556900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DDT domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 81.83 | 0.425 | 10.3 | -0.653 | 2.85 | -0.948 | 0.917 | 1.57 | -0.288 | 6.73 | 20.3 | 1331 | 5.21 | 2.17 |
| 90.47 | 0.443 | 10.4 | -1.11 | 2.93 | -0.906 | 0.686 | -- | -0.382 | 6.68 | 20.83 | 1312 | 5.43 | 2.77 |
| 83.53 | 0.426 | 10.3 | -0.638 | 2.85 | -0.965 | -- | 1.59 | -0.281 | 6.73 | 20.31 | 1327 | 5.32 | 1.97 |
| 89.05 | 0.44 | 10.4 | -1.07 | 2.71 | -0.878 | -- | -- | -0.418 | 6.79 | 20.9 | 1263 | 5.63 | 2.8 |
| 212.76 | 0.679 | 10.3 | -1.11 | -- | -2.9 | -- | -0.697 | -0.238 | -- | 22.98 | 944 | 6.13 | 7.01 |
| 141.7 | 0.558 | 10.5 | -1.51 | 3.1 | -- | 1.17 | -- | -0.719 | 6.63 | -- | -- | -- | -- |
| 145.16 | 0.564 | 10.5 | -1.49 | 3.1 | -- | -- | -- | -0.722 | 6.64 | -- | -- | -- | -- |
| 125.91 | 0.523 | 10.5 | -0.905 | -- | -3.08 | -- | -- | -0.476 | -- | 22.05 | 742 | 7.65 | 9.02 |
| 122.88 | 0.516 | 10.4 | -- | 2.69 | -0.928 | -- | -- | -0.421 | 6.75 | 20.93 | 1262 | 5.82 | 2.52 |
| 646.54 | 1.19 | 10.5 | -1.41 | -- | -- | -- | -- | -0.659 | -- | -- | -- | -- | -- |
| 203.49 | 0.667 | 10.4 | -- | 3.08 | -- | -- | -- | -0.556 | 6.67 | -- | -- | -- | -- |
| 145.5 | 0.562 | 10.5 | -- | -- | -3.16 | -- | -- | -0.381 | -- | 21.8 | 777 | 7.32 | 9.09 |
| 699.29 | 1.23 | 10.5 | -- | -- | -- | -- | -- | -0.503 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 92.38 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 2 | 92.41 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 6 |
| 5 | 92.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 6 |
| 6 | 92.66 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 3 |
| 10 | 92.83 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 11 | 92.83 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 12 | 92.87 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 22 | 93.25 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 111 | 95.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 2 |
| 141 | 96.45 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 151 | 96.69 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 278 | 100.66 | temperature | 20 | 1440 | < th | dose dependent | rect. | 2 | 2 |
| 349 | 102.09 | radiation | 30 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 427 | 103.07 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 464 | 103.50 | radiation | 40 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 468 | 103.59 | radiation | 40 | 14400 | < th | dose independent | rect. | 20 | 12 |
| 471 | 103.61 | radiation | 40 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 476 | 103.64 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 477 | 103.66 | radiation | 40 | 14400 | < th | dose independent | rect. | 22 | 10 |
| 529 | 104.14 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 544 | 104.18 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 613 | 104.66 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 626 | 104.72 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 660 | 104.87 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 11 |
| 759 | 105.29 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 17 |
| 780 | 105.42 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 21 | 17 |
| 902 | 105.93 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 23 | 13 |
| 911 | 105.97 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 9 | NA |
| 942 | 106.08 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 948 | 106.10 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 954 | 106.12 | temperature | 10 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 972 | 106.16 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 973 | 106.16 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 1 | 10 |
| 988 | 106.21 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 24 | 11 |
| 991 | 106.23 | temperature | 10 | 43200 | < th | dose independent | rect. | 4 | 1 |