BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0438600 Os04g0438600|AK065524
(196 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0438600 Conserved hypothetical protein 214 3e-56
Os08g0108700 Conserved hypothetical protein 88 3e-18
Os02g0622400 Conserved hypothetical protein 66 1e-11
>Os04g0438600 Conserved hypothetical protein
Length = 196
Score = 214 bits (545), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 121/196 (61%), Positives = 121/196 (61%)
Query: 1 MVVETETGRDXXXXXXXXXXXMDDGPCGESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
MVVETETGRD MDDGPCGES
Sbjct: 1 MVVETETGRDESEAAAATASAMDDGPCGESEGGGDAAAKAVGAKDAGEGDEPKEEEEDGR 60
Query: 61 XXXXXXXXXXXXXWSEIRLAIEELSAVDVERRGGKXXXXXXXXXXXXXXXXXXXXXQVLD 120
WSEIRLAIEELSAVDVERRGGK QVLD
Sbjct: 61 DREEEEEEAAKRGWSEIRLAIEELSAVDVERRGGKPPPPLPPPPTLTFLALSHLLLQVLD 120
Query: 121 KIGPTMAVLRLDVQRNIERLQELYLLDPSKYYNLEEILEKEVDEGTARKVDSCARAILWL 180
KIGPTMAVLRLDVQRNIERLQELYLLDPSKYYNLEEILEKEVDEGTARKVDSCARAILWL
Sbjct: 121 KIGPTMAVLRLDVQRNIERLQELYLLDPSKYYNLEEILEKEVDEGTARKVDSCARAILWL 180
Query: 181 TRDWRRILIRSVLHSL 196
TRDWRRILIRSVLHSL
Sbjct: 181 TRDWRRILIRSVLHSL 196
>Os08g0108700 Conserved hypothetical protein
Length = 235
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 60/80 (75%), Gaps = 1/80 (1%)
Query: 117 QVLDKIGPTMAVLRLDVQRNIERLQELYLLDPSKYYNLEEILEKEVDEGTARKVDSCARA 176
VLD+IGPT+ VLR D+Q+N++RLQ++ DPSKY +L I+ +EV+EGT++K +SC RA
Sbjct: 56 HVLDEIGPTLLVLRQDIQQNVQRLQDVLARDPSKYSSLTAIVTEEVEEGTSKKANSCTRA 115
Query: 177 ILWLTRDWRRIL-IRSVLHS 195
ILWL RIL IRS+ S
Sbjct: 116 ILWLASAVLRILPIRSINFS 135
>Os02g0622400 Conserved hypothetical protein
Length = 202
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 118 VLDKIGPTMAVLRLDVQRNIERLQELYLLDPSKYYNLEEILEKEVDEGTARKVDSCARAI 177
VLDK G MA+++ D+ NI RL+ Y DPSKY L ++++EV TA+ SC +
Sbjct: 38 VLDKFGAAMALVKSDIGGNITRLENKYSSDPSKYEQLYSMVQEEVQNKTAKGSSSCTNGL 97
Query: 178 LWLTR--DWRRILIRSVL 193
LWLTR D+ L R++L
Sbjct: 98 LWLTRAMDFLVELFRNLL 115
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.137 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,976,424
Number of extensions: 104557
Number of successful extensions: 334
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 332
Number of HSP's successfully gapped: 3
Length of query: 196
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 100
Effective length of database: 12,023,257
Effective search space: 1202325700
Effective search space used: 1202325700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)