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Os04g0438600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.83 (0.0341) R2 : 0.731
β1 : 1.7 (0.125) R2dD : 0.114 R2D : 0.0558
β2 : 2.63 (0.0891) R2dC : 0.512 R2C : 0.443
β3 : 1 (0.0687) R2dE : 0.125 R2E : 0.0816
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.764 (0.0727) R2dN8 : 0.0875 R2N8 : 0.0268
σ : 0.637
deviance : 186.88
__
_____
C
peak time of C : 17.9
E
wheather : radiation
threshold : 15.96
memory length : 15
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
178.27 0.627 9.83 1.66 2.61 1 1.11 -1.01 0.757 17.9 15.98 15 -- --
183.88 0.632 9.83 1.68 2.61 1.03 1.11 -- 0.758 17.8 15.96 17 -- --
181.28 0.627 9.83 1.65 2.61 1 -- -1 0.76 17.9 15.98 15 -- --
186.88 0.637 9.83 1.7 2.63 1 -- -- 0.764 17.9 15.96 15 -- --
533.4 1.08 9.77 1.58 -- 0.942 -- -1.01 0.753 -- 15.85 17 -- --
220.14 0.696 9.85 1.63 2.7 -- 0.679 -- 0.764 19.2 -- -- -- --
221.37 0.697 9.85 1.62 2.7 -- -- -- 0.766 19.2 -- -- -- --
539.49 1.08 9.79 1.61 -- 0.873 -- -- 0.719 -- 15.87 16 -- --
256.47 0.746 9.87 -- 2.61 0.997 -- -- 0.583 18.1 19.79 18 -- --
607.01 1.15 9.79 1.57 -- -- -- -- 0.719 -- -- -- -- --
290.46 0.797 9.89 -- 2.68 -- -- -- 0.585 19.3 -- -- -- --
606.29 1.15 9.86 -- -- 0.897 -- -- 0.546 -- 19.76 18 -- --
672.05 1.21 9.83 -- -- -- -- -- 0.545 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 172.47 humidity 80.0 14400 > th dose independent rect. 14 1
3 173.96 atmosphere 1000.0 270 > th dose independent rect. 12 20
4 174.36 atmosphere 1000.0 10 > th dose independent rect. 12 22
5 174.41 atmosphere 1000.0 90 > th dose independent rect. 12 22
6 174.48 wind 1.0 14400 < th dose independent rect. 4 3
9 174.91 wind 1.0 14400 > th dose independent rect. 4 3
10 175.10 wind 1.0 14400 < th dose independent rect. 2 5
13 175.35 humidity 80.0 14400 < th dose independent rect. 13 2
14 175.35 radiation 1.0 90 > th dose dependent rect. 7 7
15 175.43 radiation 1.0 90 > th dose dependent rect. 9 5
16 175.45 wind 1.0 43200 < th dose dependent rect. 3 6
22 175.67 wind 9.0 43200 < th dose dependent rect. 5 1
26 175.73 humidity 70.0 14400 > th dose dependent rect. 13 1
27 175.77 wind 1.0 14400 > th dose independent rect. 2 5
28 175.83 radiation 40.0 10 < th dose dependent rect. 12 22
29 175.85 wind 1.0 43200 > th dose dependent rect. 5 1
34 176.34 wind 1.0 43200 < th dose independent rect. 23 8
36 176.39 wind 1.0 43200 < th dose dependent rect. 2 11
39 176.56 wind 1.0 43200 > th dose independent rect. 23 8
40 176.59 wind 1.0 43200 < th dose dependent rect. 2 9
45 176.67 radiation 40.0 90 < th dose independent rect. 11 23
46 176.78 humidity 90.0 14400 > th dose independent rect. 20 2
47 176.91 wind 1.0 43200 < th dose dependent rect. 5 2
48 176.96 radiation 20.0 90 < th dose dependent rect. 5 12
52 177.10 temperature 20.0 14400 > th dose dependent rect. 13 1
65 177.17 radiation 10.0 90 > th dose independent rect. 9 5
79 177.65 radiation 1.0 10 > th dose dependent rect. 7 7
82 177.69 wind 9.0 43200 < th dose dependent rect. 4 4
84 177.74 radiation 1.0 10 > th dose dependent rect. 10 4
86 177.77 precipitation 0.1 14400 > th dose independent rect. 9 7
93 177.93 radiation 1.0 10 > th dose dependent sin 0 NA
94 177.94 precipitation 0.1 14400 < th dose independent rect. 9 7
95 177.94 precipitation 0.1 14400 < th dose dependent rect. 9 7
97 178.02 precipitation 0.1 14400 > th dose dependent rect. 7 9
121 178.31 radiation 1.0 10 > th dose dependent rect. 15 23
129 178.39 radiation 20.0 90 < th dose dependent rect. 5 10
131 178.43 precipitation 0.1 14400 > th dose independent rect. 7 9
135 178.49 radiation 1.0 10 > th dose dependent rect. 7 9
136 178.50 radiation 20.0 10 < th dose dependent rect. 6 11
144 178.62 wind 1.0 43200 > th dose dependent rect. 5 3
145 178.62 radiation 1.0 10 > th dose dependent rect. 7 23
152 178.72 radiation 20.0 10 < th dose independent rect. 21 23
166 178.85 radiation 20.0 30 < th dose independent rect. 5 23
169 178.91 precipitation 0.1 14400 < th dose independent rect. 7 9
170 178.91 precipitation 0.1 14400 < th dose dependent rect. 7 9
172 178.93 precipitation 0.1 14400 > th dose independent rect. 14 2
173 178.93 precipitation 0.1 14400 > th dose dependent rect. 14 2
195 179.07 wind 9.0 43200 < th dose dependent rect. 7 1
197 179.08 radiation 1.0 10 > th dose dependent rect. 7 12
209 179.09 radiation 20.0 10 < th dose independent rect. 12 22
224 179.20 precipitation 0.1 14400 < th dose independent rect. 14 2
226 179.20 precipitation 0.1 14400 < th dose dependent rect. 14 2
235 179.28 radiation 1.0 90 > th dose dependent sin 3 NA
270 179.45 radiation 1.0 10 > th dose dependent rect. 10 2
271 179.46 wind 1.0 43200 > th dose dependent rect. 7 1
281 179.54 radiation 1.0 10 > th dose dependent rect. 18 20
283 179.55 radiation 1.0 10 > th dose dependent rect. 5 9
298 179.64 humidity 90.0 14400 > th dose dependent rect. 20 4
324 179.75 radiation 40.0 10 < th dose independent rect. 12 22
331 179.80 temperature 20.0 720 > th dose independent rect. 5 2
364 179.88 radiation 1.0 90 > th dose dependent rect. 15 23
373 179.94 radiation 20.0 10 < th dose dependent rect. 6 8
374 179.94 wind 7.0 43200 < th dose dependent rect. 23 9
381 179.98 temperature 30.0 14400 < th dose dependent rect. 13 1
385 180.02 precipitation 0.1 14400 > th dose independent rect. 5 11
409 180.13 radiation 10.0 10 > th dose dependent rect. 13 23
411 180.15 precipitation 0.1 14400 < th dose independent rect. 5 11
414 180.15 precipitation 0.1 14400 < th dose dependent rect. 5 11
430 180.24 wind 9.0 43200 < th dose dependent rect. 1 7
442 180.32 humidity 90.0 14400 > th dose dependent rect. 20 1
460 180.40 temperature 25.0 14400 < th dose independent rect. 10 1
473 180.46 radiation 30.0 90 < th dose dependent rect. 5 5
477 180.48 radiation 20.0 90 < th dose independent rect. 5 12
485 180.51 radiation 20.0 10 > th dose independent rect. 15 23
492 180.55 radiation 20.0 10 < th dose independent rect. 6 14
499 180.60 humidity 90.0 4320 > th dose dependent rect. 7 3
579 180.90 temperature 25.0 14400 > th dose independent rect. 10 1
582 180.91 radiation 10.0 10 > th dose independent rect. 10 4
592 180.95 radiation 40.0 10 < th dose dependent rect. 21 23
618 181.02 radiation 20.0 10 < th dose independent no NA NA
624 181.04 radiation 1.0 10 > th dose dependent no NA NA
735 181.14 wind 1.0 43200 > th dose dependent rect. 23 9
771 181.24 humidity 90.0 14400 < th dose independent rect. 20 2
775 181.25 wind 1.0 43200 > th dose dependent rect. 1 7
827 181.46 temperature 20.0 14400 > th dose dependent sin 23 NA
889 181.61 radiation 20.0 10 < th dose independent rect. 15 23
894 181.62 radiation 40.0 90 < th dose independent rect. 5 14
908 181.69 radiation 20.0 10 > th dose independent rect. 7 7
911 181.69 temperature 25.0 14400 < th dose independent rect. 6 10
913 181.69 wind 1.0 43200 < th dose independent rect. 2 11
956 181.76 radiation 40.0 10 < th dose dependent rect. 5 23
963 181.79 temperature 25.0 14400 > th dose independent rect. 6 10