BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0438600 Os04g0438600|AK065524
         (196 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21360.1  | chr1:7481365-7483237 FORWARD LENGTH=224             91   3e-19
AT3G21260.3  | chr3:7464132-7465785 REVERSE LENGTH=234             88   3e-18
AT2G33470.1  | chr2:14176599-14177950 REVERSE LENGTH=203           58   3e-09

>AT1G21360.1 | chr1:7481365-7483237 FORWARD LENGTH=224
          Length = 223

 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/108 (47%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 75  SEIRLAIEELSAVDVERRGGKXXXXXXXXXXXXXXXXXXXXXQVLDKIGPTMAVLRLDVQ 134
           +EI+ AIEELS   V +   K                     QVLDKIGPTMAVLR D+ 
Sbjct: 14  TEIQTAIEELSVFIVTKPADKTEATHIPLRPILSFCSLII--QVLDKIGPTMAVLRQDID 71

Query: 135 RNIERLQELYLLDPSKYYNLEEILEKEVDEGTARKVDSCARAILWLTR 182
           +NI+RL++ Y  D   Y NL EIL+KE +EGT++ V SC RA+ WLTR
Sbjct: 72  QNIQRLEKFYETDSCVYSNLAEILKKEKEEGTSKMVASCGRALFWLTR 119



>AT3G21260.3 | chr3:7464132-7465785 REVERSE LENGTH=234
          Length = 233

 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 52/66 (78%)

Query: 117 QVLDKIGPTMAVLRLDVQRNIERLQELYLLDPSKYYNLEEILEKEVDEGTARKVDSCARA 176
           QVLDKIGPTMAVLR D+ +NI+RL++++  DP  Y NL EIL KE  EG++RK  SC+RA
Sbjct: 64  QVLDKIGPTMAVLRHDIDQNIQRLEKMWESDPLVYSNLVEILRKEAKEGSSRKPKSCSRA 123

Query: 177 ILWLTR 182
            LWLTR
Sbjct: 124 ALWLTR 129



>AT2G33470.1 | chr2:14176599-14177950 REVERSE LENGTH=203
          Length = 202

 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 39/65 (60%)

Query: 118 VLDKIGPTMAVLRLDVQRNIERLQELYLLDPSKYYNLEEILEKEVDEGTARKVDSCARAI 177
           V+DK G  M +++ D+  NI RL++ YL DP K+  L   ++ E++   A+   SC   +
Sbjct: 38  VIDKFGAAMTLVKSDIGGNITRLEKNYLSDPDKFKYLYTFVQVEIESKIAKGSSSCTNGL 97

Query: 178 LWLTR 182
           LWLTR
Sbjct: 98  LWLTR 102



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.137    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,511,053
Number of extensions: 69472
Number of successful extensions: 172
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 3
Length of query: 196
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 103
Effective length of database: 8,556,881
Effective search space: 881358743
Effective search space used: 881358743
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)