Os02g0622400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0622400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.8 | 0.257 | 12.8 | -1.28 | 0.232 | 0.293 | 0.454 | -3.46 | -0.224 | 21.4 | 10.01 | 696 | -- | -- |
| 37.16 | 0.284 | 12.7 | -0.706 | 0.264 | 0.277 | -0.24 | -- | -0.0711 | 20.6 | -0.6304 | 1187 | -- | -- |
| 30.41 | 0.257 | 12.8 | -1.23 | 0.224 | 0.302 | -- | -3.11 | -0.207 | 21.4 | 6.709 | 668 | -- | -- |
| 36.83 | 0.283 | 12.7 | -0.768 | 0.275 | 0.322 | -- | -- | -0.09 | 21 | -9.061 | 5508 | -- | -- |
| 32.88 | 0.267 | 12.8 | -1.25 | -- | 0.458 | -- | -3.02 | -0.225 | -- | 14.2 | 687 | -- | -- |
| 38.4 | 0.291 | 12.7 | -0.622 | 0.281 | -- | -0.21 | -- | -0.0231 | 21.1 | -- | -- | -- | -- |
| 38.55 | 0.291 | 12.7 | -0.615 | 0.281 | -- | -- | -- | -0.0232 | 21.2 | -- | -- | -- | -- |
| 40.97 | 0.298 | 12.7 | -0.782 | -- | 0.356 | -- | -- | -0.0957 | -- | 1.278 | 5191 | -- | -- |
| 43.56 | 0.307 | 12.6 | -- | 0.285 | -0.359 | -- | -- | 0.152 | 21.2 | -31.92 | 47520 | -- | -- |
| 43.12 | 0.307 | 12.7 | -0.614 | -- | -- | -- | -- | -0.0246 | -- | -- | -- | -- | -- |
| 48.51 | 0.326 | 12.7 | -- | 0.282 | -- | -- | -- | 0.0453 | 21 | -- | -- | -- | -- |
| 47.34 | 0.32 | 12.6 | -- | -- | -0.353 | -- | -- | 0.174 | -- | 20.44 | 47520 | -- | -- |
| 53.07 | 0.34 | 12.7 | -- | -- | -- | -- | -- | 0.0435 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.95 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 19 |
| 2 | 29.01 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 20 |
| 11 | 29.11 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 16 |
| 94 | 29.52 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 120 | 29.59 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 123 | 29.60 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 134 | 29.62 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 141 | 29.63 | temperature | 30 | 720 | < th | dose dependent | sin | 21 | NA |
| 152 | 29.66 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 4 |
| 164 | 29.68 | temperature | 10 | 720 | > th | dose dependent | sin | 21 | NA |
| 165 | 29.68 | temperature | 25 | 1440 | < th | dose dependent | sin | 19 | NA |
| 214 | 29.76 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 229 | 29.78 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 236 | 29.79 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 23 |
| 245 | 29.81 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 4 |
| 256 | 29.82 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 283 | 29.83 | temperature | 30 | 720 | < th | dose dependent | rect. | 12 | 23 |
| 296 | 29.85 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 17 |
| 297 | 29.85 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 316 | 29.86 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 350 | 29.87 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 368 | 29.89 | temperature | 20 | 720 | < th | dose independent | rect. | 6 | 18 |
| 423 | 29.92 | temperature | 20 | 1440 | > th | dose independent | rect. | 9 | 17 |
| 484 | 29.95 | temperature | 20 | 1440 | > th | dose independent | rect. | 11 | 14 |
| 487 | 29.95 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 510 | 29.95 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 514 | 29.96 | temperature | 10 | 1440 | > th | dose dependent | sin | 18 | NA |
| 549 | 29.98 | temperature | 20 | 1440 | > th | dose independent | sin | 18 | NA |
| 571 | 29.99 | temperature | 20 | 1440 | < th | dose independent | rect. | 9 | 17 |
| 573 | 29.99 | temperature | 20 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 656 | 30.02 | temperature | 20 | 1440 | < th | dose independent | rect. | 11 | 15 |
| 663 | 30.02 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 6 |
| 711 | 30.04 | temperature | 15 | 4320 | < th | dose dependent | sin | 9 | NA |
| 721 | 30.04 | temperature | 15 | 4320 | < th | dose dependent | rect. | 19 | 12 |
| 816 | 30.07 | temperature | 20 | 1440 | < th | dose independent | sin | 18 | NA |
| 939 | 30.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 23 |