BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0622400 Os02g0622400|AK061679
         (202 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0622400  Conserved hypothetical protein                      421   e-118
Os07g0445800                                                      313   7e-86
Os08g0108700  Conserved hypothetical protein                      117   5e-27
Os04g0438600  Conserved hypothetical protein                       70   1e-12

>Os02g0622400 Conserved hypothetical protein
          Length = 202

 Score =  421 bits (1081), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/202 (100%), Positives = 202/202 (100%)

Query: 1   MAETVFTPSLEGMKHVKSESSVILTKPFLDVCKQILPVLDKFGAAMALVKSDIGGNITRL 60
           MAETVFTPSLEGMKHVKSESSVILTKPFLDVCKQILPVLDKFGAAMALVKSDIGGNITRL
Sbjct: 1   MAETVFTPSLEGMKHVKSESSVILTKPFLDVCKQILPVLDKFGAAMALVKSDIGGNITRL 60

Query: 61  ENKYSSDPSKYEQLYSMVQEEVQNKTAKGSSSCTNGLLWLTRAMDFLVELFRNLLEHQDW 120
           ENKYSSDPSKYEQLYSMVQEEVQNKTAKGSSSCTNGLLWLTRAMDFLVELFRNLLEHQDW
Sbjct: 61  ENKYSSDPSKYEQLYSMVQEEVQNKTAKGSSSCTNGLLWLTRAMDFLVELFRNLLEHQDW 120

Query: 121 TMSQACTDSYTKTLKKWHGWLASSSFTVAMKLAPNREKFMEVISGTGDIKADIEKFCTTF 180
           TMSQACTDSYTKTLKKWHGWLASSSFTVAMKLAPNREKFMEVISGTGDIKADIEKFCTTF
Sbjct: 121 TMSQACTDSYTKTLKKWHGWLASSSFTVAMKLAPNREKFMEVISGTGDIKADIEKFCTTF 180

Query: 181 YPFLKENHDFLASVGLDDLKAS 202
           YPFLKENHDFLASVGLDDLKAS
Sbjct: 181 YPFLKENHDFLASVGLDDLKAS 202



>Os07g0445800 
          Length = 222

 Score =  313 bits (801), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 159/222 (71%), Positives = 184/222 (82%), Gaps = 20/222 (9%)

Query: 1   MAETVFTPSLEGMKHVKSESSVILTKPFLDVCKQILPVLDKFGAAMALVKSDIGGNITRL 60
           M  TVFTPSL+G+K+VKSES VILTKPFL+VCK ILPVLDKFG+AM++VK+DIGGNITRL
Sbjct: 1   MEGTVFTPSLQGIKNVKSESGVILTKPFLEVCKHILPVLDKFGSAMSIVKNDIGGNITRL 60

Query: 61  ENKYSSDPSKYEQLYSMVQEEVQNKTAKGSSSCTNGLLWLTRAMDFLVELFRNLLEHQDW 120
           E KY+SDPSKYEQL+SMV+ E+ +KTAK SSSCTNGLLWLTRAMDFLV LF NL++H DW
Sbjct: 61  ETKYASDPSKYEQLHSMVKVEISSKTAKSSSSCTNGLLWLTRAMDFLVALFHNLVQHPDW 120

Query: 121 TMSQACTDSYTKTLKKWHGWLASSSFT---------VAMKLAPNREKFMEVISGTGDIKA 171
            MSQAC+D+Y+KTLKKWHGWLASSSF+         VA+KLAP+R+KFME+ISG+GDI A
Sbjct: 121 QMSQACSDAYSKTLKKWHGWLASSSFSEYLTIPEFQVAIKLAPDRKKFMEIISGSGDINA 180

Query: 172 DIEKFCTTFYPFLKENHDFL-----------ASVGLDDLKAS 202
           DIEKFC TF P L ENH FL           ASVG+DDLKAS
Sbjct: 181 DIEKFCATFSPLLAENHRFLVAVYNRFVYFQASVGMDDLKAS 222



>Os08g0108700 Conserved hypothetical protein
          Length = 235

 Score =  117 bits (293), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 104/192 (54%), Gaps = 14/192 (7%)

Query: 25  TKPFLDVCKQILPVLDKFGAAMALVKSDIGGNITRLENKYSSDPSKYEQLYSMVQEEVQN 84
           T   L V K I+ VLD+ G  + +++ DI  N+ RL++  + DPSKY  L ++V EEV+ 
Sbjct: 44  TMDLLCVSKHIIHVLDEIGPTLLVLRQDIQQNVQRLQDVLARDPSKYSSLTAIVTEEVEE 103

Query: 85  KTAKGSSSCTNGLLWLT---------RAMDFLVELFRNLLEHQDW-TMSQACTDSYTKTL 134
            T+K ++SCT  +LWL          R+++F   L   LL   D  ++ +    +Y  TL
Sbjct: 104 GTSKKANSCTRAILWLASAVLRILPIRSINFSKHLLEGLLNTCDQSSLREIVEKAYITTL 163

Query: 135 KKWHGWLASSSFTVAMKLAPNREKFMEVISGTGD----IKADIEKFCTTFYPFLKENHDF 190
           K WHGW++S+++ VA KL P +E F+ ++ G          D++   +   P ++E +  
Sbjct: 164 KPWHGWISSAAYRVAQKLIPEKEIFIALLMGNCQEFEVFAKDVKVLLSIVQPLIEEANAV 223

Query: 191 LASVGLDDLKAS 202
           L    LD LK++
Sbjct: 224 LVKHNLDKLKST 235



>Os04g0438600 Conserved hypothetical protein
          Length = 196

 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 53/88 (60%), Gaps = 2/88 (2%)

Query: 28  FLDVCKQILPVLDKFGAAMALVKSDIGGNITRLENKYSSDPSKYEQLYSMVQEEVQNKTA 87
           FL +   +L VLDK G  MA+++ D+  NI RL+  Y  DPSKY  L  ++++EV   TA
Sbjct: 108 FLALSHLLLQVLDKIGPTMAVLRLDVQRNIERLQELYLLDPSKYYNLEEILEKEVDEGTA 167

Query: 88  KGSSSCTNGLLWLTRAMDFLVELFRNLL 115
           +   SC   +LWLTR  D+   L R++L
Sbjct: 168 RKVDSCARAILWLTR--DWRRILIRSVL 193



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.130    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,422,180
Number of extensions: 232531
Number of successful extensions: 520
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 517
Number of HSP's successfully gapped: 4
Length of query: 202
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 106
Effective length of database: 12,023,257
Effective search space: 1274465242
Effective search space used: 1274465242
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)