BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0622400 Os02g0622400|AK061679
(202 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G33470.1 | chr2:14176599-14177950 REVERSE LENGTH=203 326 5e-90
AT1G21360.1 | chr1:7481365-7483237 FORWARD LENGTH=224 134 2e-32
AT3G21260.3 | chr3:7464132-7465785 REVERSE LENGTH=234 132 2e-31
AT2G34690.1 | chr2:14630425-14631779 FORWARD LENGTH=207 47 5e-06
>AT2G33470.1 | chr2:14176599-14177950 REVERSE LENGTH=203
Length = 202
Score = 326 bits (836), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 149/202 (73%), Positives = 177/202 (87%)
Query: 1 MAETVFTPSLEGMKHVKSESSVILTKPFLDVCKQILPVLDKFGAAMALVKSDIGGNITRL 60
M TVFTP LEGMKHVKS+ +LTKPFL++CK ILPV+DKFGAAM LVKSDIGGNITRL
Sbjct: 1 MEGTVFTPCLEGMKHVKSDQGEMLTKPFLELCKTILPVIDKFGAAMTLVKSDIGGNITRL 60
Query: 61 ENKYSSDPSKYEQLYSMVQEEVQNKTAKGSSSCTNGLLWLTRAMDFLVELFRNLLEHQDW 120
E Y SDP K++ LY+ VQ E+++K AKGSSSCTNGLLWLTRAMDFLVELFRNL+ HQDW
Sbjct: 61 EKNYLSDPDKFKYLYTFVQVEIESKIAKGSSSCTNGLLWLTRAMDFLVELFRNLVAHQDW 120
Query: 121 TMSQACTDSYTKTLKKWHGWLASSSFTVAMKLAPNREKFMEVISGTGDIKADIEKFCTTF 180
+M QAC DSY KTLKKWHGWLASS+F++A+KLAP+R+KFM+VISG+G+I+AD+E+FC F
Sbjct: 121 SMPQACADSYQKTLKKWHGWLASSTFSMALKLAPDRKKFMDVISGSGNIQADMERFCAEF 180
Query: 181 YPFLKENHDFLASVGLDDLKAS 202
PFL +NH FLASVG+DD+KAS
Sbjct: 181 GPFLHDNHKFLASVGMDDMKAS 202
>AT1G21360.1 | chr1:7481365-7483237 FORWARD LENGTH=224
Length = 223
Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 103/189 (54%), Gaps = 4/189 (2%)
Query: 17 KSESSVILTKPFLDVCKQILPVLDKFGAAMALVKSDIGGNITRLENKYSSDPSKYEQLYS 76
K+E++ I +P L C I+ VLDK G MA+++ DI NI RLE Y +D Y L
Sbjct: 34 KTEATHIPLRPILSFCSLIIQVLDKIGPTMAVLRQDIDQNIQRLEKFYETDSCVYSNLAE 93
Query: 77 MVQEEVQNKTAKGSSSCTNGLLWLTRAMDFLVELFRNLLEHQDWTMSQACTDSYTKTLKK 136
++++E + T+K +SC L WLTR MDF L R L + M + + Y TLK
Sbjct: 94 ILKKEKEEGTSKMVASCGRALFWLTRTMDFTAGLLRLLSKEMSSKMEELVEECYMTTLKP 153
Query: 137 WHGWLASSSFTVAMKLAPNREKFMEVISGTGD----IKADIEKFCTTFYPFLKENHDFLA 192
HGW+AS++F V +KL P+ + FME I + ++ DI+ + P LKE + L
Sbjct: 154 HHGWIASAAFKVCLKLVPDNKTFMEAIGARDESYDTLREDIDTLSSLLTPILKEIYFVLE 213
Query: 193 SVGLDDLKA 201
GL L++
Sbjct: 214 QYGLSRLRS 222
>AT3G21260.3 | chr3:7464132-7465785 REVERSE LENGTH=234
Length = 233
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 87/143 (60%)
Query: 26 KPFLDVCKQILPVLDKFGAAMALVKSDIGGNITRLENKYSSDPSKYEQLYSMVQEEVQNK 85
KP L C I+ VLDK G MA+++ DI NI RLE + SDP Y L ++++E +
Sbjct: 53 KPLLSFCNIIVQVLDKIGPTMAVLRHDIDQNIQRLEKMWESDPLVYSNLVEILRKEAKEG 112
Query: 86 TAKGSSSCTNGLLWLTRAMDFLVELFRNLLEHQDWTMSQACTDSYTKTLKKWHGWLASSS 145
+++ SC+ LWLTRAMDF + L + L++ M QA + Y T+K WHGW++S++
Sbjct: 113 SSRKPKSCSRAALWLTRAMDFTLALLQRLVKDMSQNMEQAIEECYNLTIKPWHGWISSAA 172
Query: 146 FTVAMKLAPNREKFMEVISGTGD 168
F VA+KL PN F+ V++ +
Sbjct: 173 FKVALKLVPNNNTFINVLAAKDE 195
>AT2G34690.1 | chr2:14630425-14631779 FORWARD LENGTH=207
Length = 206
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/149 (20%), Positives = 59/149 (39%), Gaps = 5/149 (3%)
Query: 16 VKSESSVILTKPFLDVCKQILPVLDKFGAAMALVKSDIGGNITRLENKYSSDPSKYEQLY 75
V S + + F C + P+ G A + D + L SS L
Sbjct: 24 VNSPNPEVPVTQFSHACSLVSPLFGCLGIAFKFAEMDYVAKVDDLVRASSS----ISTLV 79
Query: 76 SMVQEEVQNKTAKGSSSCTNGLLWLTRAMDFLVELFRNLLEHQ-DWTMSQACTDSYTKTL 134
M+ ++++ + + S T LL + R +D + LF ++ + D ++ T SY +
Sbjct: 80 VMMDKDIEADCVRKAGSHTRNLLRVKRGLDMVKVLFEQIIASEGDNSLKDPATKSYAQVF 139
Query: 135 KKWHGWLASSSFTVAMKLAPNREKFMEVI 163
HGW + ++ M P R + ++
Sbjct: 140 APHHGWAIRKAVSLGMYALPTRAHLLNML 168
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.130 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,379,810
Number of extensions: 167574
Number of successful extensions: 476
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 476
Number of HSP's successfully gapped: 4
Length of query: 202
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 108
Effective length of database: 8,529,465
Effective search space: 921182220
Effective search space used: 921182220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)