BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0431000 Os04g0431000|AK111961
(257 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0431000 Hypothetical protein 508 e-144
Os02g0550000 Conserved hypothetical protein 236 1e-62
>Os04g0431000 Hypothetical protein
Length = 257
Score = 508 bits (1308), Expect = e-144, Method: Compositional matrix adjust.
Identities = 247/257 (96%), Positives = 247/257 (96%)
Query: 1 GQKNIEQHYAVHESREENMLPPKXXXXXXXXXXMQIYNVDTPPQDEDLIASADKEKVAGV 60
GQKNIEQHYAVHESREENMLPPK MQIYNVDTPPQDEDLIASADKEKVAGV
Sbjct: 1 GQKNIEQHYAVHESREENMLPPKVGVQQQVEEGMQIYNVDTPPQDEDLIASADKEKVAGV 60
Query: 61 ALLPSIKAEAVVAKEEDKFGQSSSFKICDLNLVGSPEVAELRNDPGLGQFSTAGCSMEPQ 120
ALLPSIKAEAVVAKEEDKFGQSSSFKICDLNLVGSPEVAELRNDPGLGQFSTAGCSMEPQ
Sbjct: 61 ALLPSIKAEAVVAKEEDKFGQSSSFKICDLNLVGSPEVAELRNDPGLGQFSTAGCSMEPQ 120
Query: 121 NQQQEFRNTGNSADDTNMHAQIPLHNKVVQVIDLEDDSPIEAGACDTSKAKEENMANPAV 180
NQQQEFRNTGNSADDTNMHAQIPLHNKVVQVIDLEDDSPIEAGACDTSKAKEENMANPAV
Sbjct: 121 NQQQEFRNTGNSADDTNMHAQIPLHNKVVQVIDLEDDSPIEAGACDTSKAKEENMANPAV 180
Query: 181 TTDVLPGIQDGYNFAISDYLGADIPCYQPMQTDLPNGMSLNDSEGITVMDDSIYGSLSDI 240
TTDVLPGIQDGYNFAISDYLGADIPCYQPMQTDLPNGMSLNDSEGITVMDDSIYGSLSDI
Sbjct: 181 TTDVLPGIQDGYNFAISDYLGADIPCYQPMQTDLPNGMSLNDSEGITVMDDSIYGSLSDI 240
Query: 241 GFMEVWDQQPQDYEKFF 257
GFMEVWDQQPQDYEKFF
Sbjct: 241 GFMEVWDQQPQDYEKFF 257
>Os02g0550000 Conserved hypothetical protein
Length = 808
Score = 236 bits (602), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 127/229 (55%), Positives = 153/229 (66%), Gaps = 10/229 (4%)
Query: 39 VDTPPQDEDLIASADKEKVAGVALLPSIKAEAVVAKEEDKFGQSSSFKICDLNLVGSPEV 98
+D PQD DLI + + K G L ++ AEA E++ Q + FKICD NL+GS EV
Sbjct: 580 IDMLPQDVDLIELSGQRKSVGGELFSNVGAEAASKMEDENLEQPNPFKICDQNLIGSSEV 639
Query: 99 AELRNDPGLGQFSTAG-CSMEPQNQQQEFRNT-GNSADDTNMHAQIPLHNKVVQVIDLED 156
+ + N+PGL Q ST G C+ +NQ Q+F T G+ A TN Q+PL NK VQVID+ED
Sbjct: 640 SVIHNNPGLAQCSTEGSCTESQKNQHQDFVTTSGDIAGSTNNMCQLPLDNKGVQVIDIED 699
Query: 157 DSPIEAGACDTSKAKEE-------NMANPAVTTDVLPGIQDGYNFAISDYLGADIPCYQP 209
D+PIE G D+SKAK + NM P V + LPGIQDGYN AISDYLG DIPCY
Sbjct: 700 DTPIEVGGFDSSKAKSDMICSNMDNMMGPVVHSGDLPGIQDGYNLAISDYLGGDIPCYPS 759
Query: 210 MQTDLPNGMSLNDSEGITVMDDSIYGSLSDIGFMEVWDQQPQ-DYEKFF 257
MQ+DL G+ NDSEGITVMDD IYGSL+DIGFM+VW Q Q DYEKFF
Sbjct: 760 MQSDLHGGIGANDSEGITVMDDPIYGSLTDIGFMDVWGQPTQDDYEKFF 808
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.131 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,912,028
Number of extensions: 368558
Number of successful extensions: 541
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 539
Number of HSP's successfully gapped: 2
Length of query: 257
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 158
Effective length of database: 11,866,615
Effective search space: 1874925170
Effective search space used: 1874925170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 155 (64.3 bits)