Os04g0431000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os04g0431000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.99 | 0.329 | 10.8 | 0.272 | 2.33 | 1.29 | -0.496 | -0.0643 | -0.0784 | 15.1 | 23.97 | 832 | -- | -- |
| 49 | 0.326 | 10.8 | 0.264 | 2.33 | 1.29 | -0.508 | -- | -0.0794 | 15.1 | 23.97 | 832 | -- | -- |
| 49.78 | 0.329 | 10.8 | 0.29 | 2.31 | 1.28 | -- | -0.188 | -0.0735 | 15.1 | 24 | 841 | -- | -- |
| 49.83 | 0.329 | 10.8 | 0.256 | 2.32 | 1.31 | -- | -- | -0.0815 | 15.1 | 23.9 | 840 | -- | -- |
| 337.21 | 0.855 | 10.8 | 0.499 | -- | 2.09 | -- | -0.406 | 0.099 | -- | 27.04 | 1034 | -- | -- |
| 72.29 | 0.399 | 10.9 | -0.0954 | 2.4 | -- | -0.593 | -- | -0.324 | 14.8 | -- | -- | -- | -- |
| 73.5 | 0.401 | 10.9 | -0.109 | 2.4 | -- | -- | -- | -0.327 | 14.8 | -- | -- | -- | -- |
| 337.38 | 0.855 | 10.8 | 0.418 | -- | 2.12 | -- | -- | 0.0889 | -- | 26.98 | 1033 | -- | -- |
| 51.33 | 0.334 | 10.9 | -- | 2.33 | 1.2 | -- | -- | -0.125 | 15.1 | 23.9 | 827 | -- | -- |
| 407.22 | 0.943 | 10.9 | -0.212 | -- | -- | -- | -- | -0.389 | -- | -- | -- | -- | -- |
| 73.81 | 0.402 | 10.9 | -- | 2.4 | -- | -- | -- | -0.315 | 14.8 | -- | -- | -- | -- |
| 341.38 | 0.861 | 10.8 | -- | -- | 1.93 | -- | -- | 0.0061 | -- | 26.9 | 1028 | -- | -- |
| 408.41 | 0.943 | 10.9 | -- | -- | -- | -- | -- | -0.365 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.46 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 11 |
| 3 | 46.16 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 5 | 46.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 3 |
| 14 | 48.38 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 12 |
| 17 | 48.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 19 |
| 19 | 48.71 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 20 |
| 73 | 49.66 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 21 |
| 89 | 49.78 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 141 | 50.15 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 19 |
| 147 | 50.18 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 1 |
| 150 | 50.19 | temperature | 25 | 720 | < th | dose dependent | sin | 9 | NA |
| 154 | 50.21 | temperature | 25 | 720 | < th | dose dependent | rect. | 2 | 23 |
| 165 | 50.30 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 178 | 50.37 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 184 | 50.43 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 10 |
| 188 | 50.50 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 3 |
| 193 | 50.54 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 11 |
| 322 | 51.50 | temperature | 10 | 720 | > th | dose dependent | sin | 9 | NA |
| 395 | 51.99 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 14 |
| 399 | 52.02 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 401 | 52.06 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 3 |
| 435 | 52.28 | temperature | 20 | 720 | < th | dose independent | rect. | 20 | 18 |
| 442 | 52.31 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 3 |
| 446 | 52.33 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 22 |
| 473 | 52.41 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 14 |
| 495 | 52.48 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 546 | 52.62 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 15 |
| 578 | 52.71 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 584 | 52.73 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 699 | 53.01 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 8 |
| 746 | 53.11 | temperature | 20 | 720 | < th | dose independent | rect. | 12 | 22 |
| 813 | 53.25 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 838 | 53.30 | temperature | 20 | 720 | < th | dose independent | rect. | 2 | 22 |
| 839 | 53.30 | temperature | 25 | 1440 | < th | dose dependent | sin | 17 | NA |
| 904 | 53.42 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 955 | 53.52 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 972 | 53.55 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 10 |