BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0429800 Os04g0429800|AK067438
         (312 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0429800  Nicotinate phosphoribosyltransferase and relat...   646   0.0  
Os03g0837300  Nicotinate phosphoribosyltransferase and relat...   527   e-150

>Os04g0429800 Nicotinate phosphoribosyltransferase and related family protein
          Length = 312

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/312 (100%), Positives = 312/312 (100%)

Query: 1   RVCKNFVSLEKEWLKKIQLAESLCGVFGETNQSELAAFASYALGFPTHFLALVDTYDVMR 60
           RVCKNFVSLEKEWLKKIQLAESLCGVFGETNQSELAAFASYALGFPTHFLALVDTYDVMR
Sbjct: 1   RVCKNFVSLEKEWLKKIQLAESLCGVFGETNQSELAAFASYALGFPTHFLALVDTYDVMR 60

Query: 61  SGIPNFCAVALALHDLGYKASGIRLDSGDLAYLSIEARKVFRTLEKEFNVPAFGKMIITA 120
           SGIPNFCAVALALHDLGYKASGIRLDSGDLAYLSIEARKVFRTLEKEFNVPAFGKMIITA
Sbjct: 61  SGIPNFCAVALALHDLGYKASGIRLDSGDLAYLSIEARKVFRTLEKEFNVPAFGKMIITA 120

Query: 121 SNDLNEETIDALNKQGHEVDSFGIGTYLVTCYSQAALGCVFKLVEINSRPRIKLSEDVAK 180
           SNDLNEETIDALNKQGHEVDSFGIGTYLVTCYSQAALGCVFKLVEINSRPRIKLSEDVAK
Sbjct: 121 SNDLNEETIDALNKQGHEVDSFGIGTYLVTCYSQAALGCVFKLVEINSRPRIKLSEDVAK 180

Query: 181 VSIPCKKRCFRLYGKEGYPLVDIMMRESEPSPKAGERILCRHPFLESKRAYVVPQHVEEL 240
           VSIPCKKRCFRLYGKEGYPLVDIMMRESEPSPKAGERILCRHPFLESKRAYVVPQHVEEL
Sbjct: 181 VSIPCKKRCFRLYGKEGYPLVDIMMRESEPSPKAGERILCRHPFLESKRAYVVPQHVEEL 240

Query: 241 LQCYWPGTSNKPRVELPSLEEIRGRCMQQLEKLRPDHIRRLNPTPYKVSVSAKLYEFIHS 300
           LQCYWPGTSNKPRVELPSLEEIRGRCMQQLEKLRPDHIRRLNPTPYKVSVSAKLYEFIHS
Sbjct: 241 LQCYWPGTSNKPRVELPSLEEIRGRCMQQLEKLRPDHIRRLNPTPYKVSVSAKLYEFIHS 300

Query: 301 LWLNEAPVGELQ 312
           LWLNEAPVGELQ
Sbjct: 301 LWLNEAPVGELQ 312



>Os03g0837300 Nicotinate phosphoribosyltransferase and related family protein
          Length = 560

 Score =  527 bits (1358), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 247/310 (79%), Positives = 276/310 (89%)

Query: 3   CKNFVSLEKEWLKKIQLAESLCGVFGETNQSELAAFASYALGFPTHFLALVDTYDVMRSG 62
           C++FVSL + WL +I+ A SL G F ETN SELAAF SYAL FP  FLALVDTYDVMRSG
Sbjct: 251 CEDFVSLVQNWLARIKDAGSLRGTFRETNLSELAAFTSYALAFPNSFLALVDTYDVMRSG 310

Query: 63  IPNFCAVALALHDLGYKASGIRLDSGDLAYLSIEARKVFRTLEKEFNVPAFGKMIITASN 122
           +PNFCAVALAL+D+GYKA+GIRLDSGDLAYLS+E RK FR +E+EF    FGKM ITASN
Sbjct: 311 VPNFCAVALALNDMGYKAAGIRLDSGDLAYLSVETRKFFRAIEEEFGFIGFGKMNITASN 370

Query: 123 DLNEETIDALNKQGHEVDSFGIGTYLVTCYSQAALGCVFKLVEINSRPRIKLSEDVAKVS 182
           DLNEETIDALNKQGHEVD+FGIGTYLVTCY+QAALGCVFKLVEIN +PRIKLSEDV KVS
Sbjct: 371 DLNEETIDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVTKVS 430

Query: 183 IPCKKRCFRLYGKEGYPLVDIMMRESEPSPKAGERILCRHPFLESKRAYVVPQHVEELLQ 242
           IPCKKRC+RL+GKEGYPLVDIM  E EP+PK GER+LCRHPF ESKRAYVVPQHVEELL+
Sbjct: 431 IPCKKRCYRLFGKEGYPLVDIMTGEDEPAPKVGERLLCRHPFNESKRAYVVPQHVEELLK 490

Query: 243 CYWPGTSNKPRVELPSLEEIRGRCMQQLEKLRPDHIRRLNPTPYKVSVSAKLYEFIHSLW 302
           CYWPGT+++PR ELPS+ EIR RCM  L+++RPDH+RRLNPTPYKVSVSAKLY+FIH LW
Sbjct: 491 CYWPGTTSEPREELPSINEIRSRCMGYLDRMRPDHMRRLNPTPYKVSVSAKLYDFIHFLW 550

Query: 303 LNEAPVGELQ 312
           LNEAPVGELQ
Sbjct: 551 LNEAPVGELQ 560



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,467,562
Number of extensions: 426890
Number of successful extensions: 757
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 757
Number of HSP's successfully gapped: 2
Length of query: 312
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 211
Effective length of database: 11,762,187
Effective search space: 2481821457
Effective search space used: 2481821457
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)