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Os04g0429800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Nicotinate phosphoribosyltransferase and related family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.1 (0.0223) R2 : 0.901
β1 : 0.738 (0.0812) R2dD : 0.0186 R2D : 0.0224
β2 : 2.11 (0.103) R2dC : 0.339 R2C : 0.729
β3 : 1.13 (0.0831) R2dE : 0.151 R2E : 0.537
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.184 (0.0478) R2dN8 : 0.0044 R2N8 : -0.000976
σ : 0.415
deviance : 79.28
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C
peak time of C : 1.7
E
wheather : radiation
threshold : 11.19
memory length : 51
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
71.65 0.398 10.1 0.684 2.09 1.15 -2.04 0.692 0.174 1.72 11.17 52 -- --
72.33 0.396 10.1 0.697 2.08 1.17 -1.33 -- 0.18 1.76 11.74 51 -- --
77.2 0.409 10.1 0.784 1.93 1.33 -- -0.558 0.265 1.89 11.96 51 -- --
79.28 0.415 10.1 0.738 2.11 1.13 -- -- 0.184 1.7 11.19 51 -- --
109.25 0.487 10.1 0.82 -- 2.68 -- -1.02 0.241 -- 5.874 142 -- --
93.96 0.454 10.2 0.707 3.31 -- -1.18 -- 0.093 1.17 -- -- -- --
99.69 0.468 10.2 0.749 3.32 -- -- -- 0.0997 1.15 -- -- -- --
115.56 0.501 10.1 0.838 -- 2.67 -- -- 0.225 -- 6.02 144 -- --
93.23 0.45 10.1 -- 2.08 1.16 -- -- 0.0941 1.72 10 54 -- --
780.92 1.31 10.1 0.876 -- -- -- -- 0.166 -- -- -- -- --
114.47 0.5 10.2 -- 3.33 -- -- -- 0.0163 1.16 -- -- -- --
133.84 0.539 10.1 -- -- 2.68 -- -- 0.133 -- 6.693 138 -- --
801.15 1.32 10.1 -- -- -- -- -- 0.0689 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 64.20 radiation 1.0 90 > th dose independent sin 2 NA
3 66.23 radiation 1.0 90 < th dose independent sin 1 NA
5 66.66 radiation 1.0 90 < th dose independent rect. 2 17
7 66.81 radiation 1.0 90 < th dose dependent sin 1 NA
9 67.46 radiation 10.0 90 < th dose dependent rect. 2 17
14 68.41 radiation 30.0 10 < th dose dependent rect. 11 19
15 68.48 humidity 70.0 10 > th dose dependent rect. 2 18
21 68.70 radiation 1.0 270 < th dose independent rect. 23 20
29 68.94 radiation 1.0 270 < th dose dependent rect. 23 20
89 70.37 radiation 30.0 90 < th dose dependent rect. 1 12
91 70.38 radiation 10.0 90 < th dose dependent rect. 23 23
136 70.87 radiation 20.0 90 < th dose dependent rect. 7 23
138 70.89 radiation 20.0 10 < th dose dependent rect. 7 23
229 71.48 radiation 1.0 90 > th dose independent rect. 5 10
302 71.84 radiation 1.0 270 > th dose independent rect. 17 22
330 72.03 radiation 1.0 90 < th dose independent rect. 2 11
354 72.16 radiation 10.0 30 < th dose dependent rect. 2 6
384 72.32 radiation 40.0 270 < th dose independent rect. 13 15
387 72.33 radiation 1.0 90 < th dose independent rect. 2 6
428 72.52 radiation 40.0 270 < th dose independent rect. 10 9
429 72.52 precipitation 0.1 270 < th dose independent rect. 3 22
430 72.52 precipitation 0.1 270 < th dose dependent rect. 3 22
493 72.82 temperature 15.0 270 > th dose independent rect. 4 10
505 72.86 humidity 90.0 10 < th dose independent rect. 6 9
509 72.88 radiation 40.0 270 < th dose independent rect. 11 18
527 72.94 radiation 10.0 30 < th dose dependent rect. 15 23
529 72.97 radiation 10.0 30 < th dose dependent no NA NA
534 72.97 radiation 10.0 30 < th dose dependent rect. 13 23
568 73.11 radiation 40.0 270 < th dose independent rect. 24 17
612 73.29 precipitation 0.1 30 < th dose independent rect. 6 20
616 73.29 precipitation 0.1 30 < th dose dependent rect. 6 20
640 73.39 radiation 40.0 90 < th dose independent rect. 2 18
641 73.39 radiation 20.0 10 < th dose dependent rect. 2 4
664 73.45 humidity 80.0 30 > th dose independent rect. 2 18
743 73.69 wind 5.0 30 < th dose independent rect. 2 4
773 73.74 temperature 10.0 10 > th dose dependent rect. 6 20
848 73.99 precipitation 0.1 270 < th dose independent rect. 5 19
849 73.99 precipitation 0.1 270 < th dose dependent rect. 5 19
877 74.06 radiation 20.0 270 < th dose independent rect. 24 17
899 74.11 radiation 1.0 10 > th dose independent rect. 6 10
939 74.24 temperature 10.0 30 > th dose independent rect. 2 4
941 74.24 temperature 30.0 30 < th dose independent rect. 2 4
942 74.24 humidity 50.0 30 > th dose independent rect. 2 4
945 74.24 atmosphere 995.0 30 > th dose independent rect. 2 4
946 74.24 atmosphere 1010.0 30 < th dose independent rect. 2 4
948 74.24 radiation 20.0 30 < th dose independent rect. 2 4
951 74.24 temperature 10.0 30 > th dose independent rect. 6 20
952 74.25 wind 9.0 1440 < th dose independent rect. 3 4
953 74.25 temperature 10.0 1440 > th dose independent rect. 3 4
956 74.25 temperature 30.0 1440 < th dose independent rect. 3 4
960 74.25 humidity 50.0 1440 > th dose independent rect. 3 4
965 74.25 atmosphere 995.0 1440 > th dose independent rect. 3 4
966 74.25 radiation 40.0 1440 < th dose independent rect. 3 4
971 74.25 temperature 10.0 1440 > th dose independent rect. 7 20
991 74.29 radiation 10.0 30 < th dose dependent rect. 17 23
992 74.30 wind 1.0 90 > th dose independent rect. 2 4