BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0429800 Os04g0429800|AK067438
         (312 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G23420.1  | chr2:9971819-9974909 FORWARD LENGTH=558            518   e-147
AT4G36940.1  | chr4:17416938-17419883 FORWARD LENGTH=560          500   e-142

>AT2G23420.1 | chr2:9971819-9974909 FORWARD LENGTH=558
          Length = 557

 Score =  518 bits (1335), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 246/311 (79%), Positives = 274/311 (88%)

Query: 2   VCKNFVSLEKEWLKKIQLAESLCGVFGETNQSELAAFASYALGFPTHFLALVDTYDVMRS 61
            C++FVS  + WLKKIQ + SL G+F ETNQSELAAF SYAL FP  FLALVDTYDVM+S
Sbjct: 247 TCEDFVSHVQTWLKKIQYSPSLSGIFSETNQSELAAFTSYALAFPKTFLALVDTYDVMKS 306

Query: 62  GIPNFCAVALALHDLGYKASGIRLDSGDLAYLSIEARKVFRTLEKEFNVPAFGKMIITAS 121
           GIPNFCAVALAL+D GYKA GIRLDSGDLAYLS EAR  F T+E+E  VP FGKM++TAS
Sbjct: 307 GIPNFCAVALALNDFGYKALGIRLDSGDLAYLSREARNFFCTVERELKVPGFGKMVVTAS 366

Query: 122 NDLNEETIDALNKQGHEVDSFGIGTYLVTCYSQAALGCVFKLVEINSRPRIKLSEDVAKV 181
           NDLNEETIDALNKQGHEVD+FGIGTYLVTCYSQAALGCVFKLVEIN++PRIKLSEDV KV
Sbjct: 367 NDLNEETIDALNKQGHEVDAFGIGTYLVTCYSQAALGCVFKLVEINNQPRIKLSEDVTKV 426

Query: 182 SIPCKKRCFRLYGKEGYPLVDIMMRESEPSPKAGERILCRHPFLESKRAYVVPQHVEELL 241
           SIPCKKR +RLYGKEGYPLVDIM  E+EP PK GER+LCRHPF ESKRAYVVPQ VEELL
Sbjct: 427 SIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERLLCRHPFNESKRAYVVPQRVEELL 486

Query: 242 QCYWPGTSNKPRVELPSLEEIRGRCMQQLEKLRPDHIRRLNPTPYKVSVSAKLYEFIHSL 301
           +CYW G++++ R  LP L+EIR RC++QLE +RPDH+RRLNPTPYKVSVSAKLY+FIH L
Sbjct: 487 KCYWRGSADEAREVLPPLKEIRDRCIKQLENMRPDHMRRLNPTPYKVSVSAKLYDFIHFL 546

Query: 302 WLNEAPVGELQ 312
           WLNEAPVGELQ
Sbjct: 547 WLNEAPVGELQ 557



>AT4G36940.1 | chr4:17416938-17419883 FORWARD LENGTH=560
          Length = 559

 Score =  500 bits (1288), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 237/311 (76%), Positives = 269/311 (86%)

Query: 2   VCKNFVSLEKEWLKKIQLAESLCGVFGETNQSELAAFASYALGFPTHFLALVDTYDVMRS 61
            CK+F+ L +  L KIQ + SL G+F ETNQSELAAF SYAL FP  FLALVDTYDVM+S
Sbjct: 249 TCKDFICLVQTCLTKIQNSSSLQGIFSETNQSELAAFISYALAFPNSFLALVDTYDVMKS 308

Query: 62  GIPNFCAVALALHDLGYKASGIRLDSGDLAYLSIEARKVFRTLEKEFNVPAFGKMIITAS 121
           GIPNFCAVALAL++LGYKA GIRLDSGDLAYLS E RK F  +E++  VP FGKMI+TAS
Sbjct: 309 GIPNFCAVALALNELGYKAVGIRLDSGDLAYLSTEVRKFFCAIERDLKVPDFGKMIVTAS 368

Query: 122 NDLNEETIDALNKQGHEVDSFGIGTYLVTCYSQAALGCVFKLVEINSRPRIKLSEDVAKV 181
           NDLNEET+DALNKQGHEVD+FGIGT LVTCY+QAALGCVFKLVEIN++PRIKLSEDV KV
Sbjct: 369 NDLNEETVDALNKQGHEVDAFGIGTNLVTCYAQAALGCVFKLVEINNQPRIKLSEDVTKV 428

Query: 182 SIPCKKRCFRLYGKEGYPLVDIMMRESEPSPKAGERILCRHPFLESKRAYVVPQHVEELL 241
           SIPCKKR +RL+GKEGYPLVDIM  E+EP PK GER+LCRHPF ESKRAYVVPQ VEELL
Sbjct: 429 SIPCKKRTYRLFGKEGYPLVDIMTGENEPPPKVGERLLCRHPFNESKRAYVVPQRVEELL 488

Query: 242 QCYWPGTSNKPRVELPSLEEIRGRCMQQLEKLRPDHIRRLNPTPYKVSVSAKLYEFIHSL 301
           +CYW G +++ R EL  L+E+R RC++QLE +RPDH+RRLNPTPYKVSVSAKLY+FIH L
Sbjct: 489 KCYWRGNADEAREELEPLKELRNRCIKQLENMRPDHMRRLNPTPYKVSVSAKLYDFIHFL 548

Query: 302 WLNEAPVGELQ 312
           WLNEAPVGEL 
Sbjct: 549 WLNEAPVGELH 559



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,899,996
Number of extensions: 285394
Number of successful extensions: 612
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 612
Number of HSP's successfully gapped: 2
Length of query: 312
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 214
Effective length of database: 8,419,801
Effective search space: 1801837414
Effective search space used: 1801837414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)