Os03g0837300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nicotinate phosphoribosyltransferase and related family protein.
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Os03g0837300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nicotinate phosphoribosyltransferase and related family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.81 | 0.328 | 10.9 | -1.63 | 1.84 | -0.498 | 0.202 | 0.486 | -0.556 | 7.26 | 19.94 | 1401 | -- | -- |
| 49.02 | 0.326 | 10.9 | -1.63 | 1.85 | -0.514 | 0.256 | -- | -0.548 | 7.33 | 19.5 | 1341 | -- | -- |
| 48.64 | 0.325 | 10.9 | -1.64 | 1.84 | -0.5 | -- | 0.514 | -0.555 | 7.27 | 19.67 | 1340 | -- | -- |
| 49.11 | 0.326 | 10.9 | -1.61 | 1.85 | -0.495 | -- | -- | -0.546 | 7.33 | 19.5 | 1333 | -- | -- |
| 226.65 | 0.701 | 10.9 | -1.62 | -- | -0.47 | -- | 0.429 | -0.53 | -- | 27.2 | 1483 | -- | -- |
| 58.22 | 0.358 | 10.9 | -1.56 | 1.83 | -- | 0.222 | -- | -0.437 | 7.16 | -- | -- | -- | -- |
| 58.35 | 0.358 | 10.9 | -1.55 | 1.83 | -- | -- | -- | -0.437 | 7.16 | -- | -- | -- | -- |
| 226.89 | 0.702 | 10.9 | -1.6 | -- | -0.452 | -- | -- | -0.487 | -- | 27.34 | 1508 | -- | -- |
| 102.97 | 0.473 | 10.9 | -- | 1.81 | -0.777 | -- | -- | -0.44 | 7.26 | 19.99 | 8584 | -- | -- |
| 235.56 | 0.717 | 10.9 | -1.52 | -- | -- | -- | -- | -0.405 | -- | -- | -- | -- | -- |
| 122 | 0.517 | 10.8 | -- | 1.82 | -- | -- | -- | -0.264 | 7.22 | -- | -- | -- | -- |
| 264.04 | 0.757 | 10.9 | -- | -- | -1.09 | -- | -- | -0.542 | -- | 39.96 | 24664 | -- | -- |
| 296.49 | 0.804 | 10.9 | -- | -- | -- | -- | -- | -0.236 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.65 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 2 | 47.16 | wind | 3 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 3 | 47.40 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 4 | 47.54 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 5 | 47.67 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 9 | 47.94 | wind | 9 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 13 | 47.97 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 15 | 48.14 | wind | 9 | 43200 | < th | dose dependent | rect. | 1 | 2 |
| 18 | 48.35 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 7 |
| 19 | 48.35 | wind | 9 | 43200 | < th | dose dependent | rect. | 23 | 7 |
| 27 | 48.71 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 29 | 48.72 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 5 |
| 34 | 48.76 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 35 | 48.76 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 36 | 48.77 | wind | 7 | 43200 | < th | dose dependent | rect. | 1 | 5 |
| 43 | 48.83 | radiation | 20 | 1440 | < th | dose independent | rect. | 3 | 12 |
| 45 | 48.83 | radiation | 20 | 1440 | < th | dose independent | rect. | 24 | 15 |
| 48 | 48.83 | radiation | 20 | 1440 | < th | dose independent | rect. | 19 | 20 |
| 58 | 48.89 | radiation | 20 | 1440 | < th | dose independent | sin | 2 | NA |
| 86 | 48.95 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 104 | 48.98 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 109 | 48.98 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 17 |
| 114 | 48.98 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 23 |
| 124 | 48.99 | radiation | 20 | 1440 | < th | dose independent | rect. | 14 | 23 |
| 162 | 49.04 | radiation | 20 | 1440 | < th | dose independent | rect. | 2 | 18 |
| 181 | 49.05 | radiation | 20 | 1440 | < th | dose independent | no | NA | NA |
| 254 | 49.11 | humidity | 80 | 1440 | > th | dose independent | rect. | 21 | 17 |
| 277 | 49.23 | temperature | 20 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 302 | 49.26 | temperature | 20 | 14400 | > th | dose dependent | rect. | 8 | 7 |
| 303 | 49.27 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 312 | 49.29 | humidity | 80 | 1440 | < th | dose independent | rect. | 20 | 18 |
| 314 | 49.29 | temperature | 20 | 14400 | > th | dose dependent | rect. | 9 | 2 |
| 352 | 49.38 | wind | 1 | 43200 | > th | dose independent | rect. | 23 | 7 |
| 374 | 49.45 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 391 | 49.48 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 423 | 49.52 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 447 | 49.56 | temperature | 20 | 14400 | > th | dose dependent | sin | 23 | NA |
| 473 | 49.60 | radiation | 30 | 1440 | < th | dose dependent | rect. | 8 | 5 |
| 482 | 49.61 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 595 | 49.72 | wind | 1 | 43200 | < th | dose independent | rect. | 23 | 7 |
| 707 | 49.82 | radiation | 20 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 734 | 49.84 | temperature | 30 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 813 | 49.89 | radiation | 30 | 1440 | < th | dose dependent | rect. | 24 | 15 |
| 815 | 49.89 | radiation | 30 | 1440 | < th | dose dependent | rect. | 18 | 21 |
| 818 | 49.90 | humidity | 80 | 1440 | > th | dose independent | rect. | 23 | 16 |
| 825 | 49.90 | radiation | 30 | 1440 | < th | dose dependent | rect. | 2 | 13 |
| 914 | 49.95 | humidity | 80 | 1440 | > th | dose independent | sin | 6 | NA |
| 932 | 49.96 | temperature | 20 | 14400 | > th | dose dependent | no | NA | NA |
| 954 | 49.98 | temperature | 25 | 14400 | > th | dose independent | rect. | 24 | 16 |
| 985 | 50.01 | humidity | 80 | 1440 | < th | dose independent | rect. | 2 | 12 |