BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0429400 Os04g0429400|AK108728
         (333 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0429400  Basic helix-loop-helix dimerisation region bHL...   492   e-139
Os04g0429300  Basic helix-loop-helix dimerisation region bHL...    82   6e-16
Os02g0547500                                                       77   1e-14

>Os04g0429400 Basic helix-loop-helix dimerisation region bHLH domain containing
           protein
          Length = 333

 Score =  492 bits (1266), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 251/333 (75%), Positives = 251/333 (75%)

Query: 1   MSQEGADLSQDVDESPYHTAVVTTNNLVRSIKAEKXXXXXXXGKPVETDIGLKVASPTMF 60
           MSQEGADLSQDVDESPYHTAVVTTNNLVRSIKAEK       GKPVETDIGLKVASPTMF
Sbjct: 1   MSQEGADLSQDVDESPYHTAVVTTNNLVRSIKAEKSNSSSSSGKPVETDIGLKVASPTMF 60

Query: 61  GFNTKIEGTGKNMAXXXXXXXXXXXXXXXXXXXXXDTNGKGKNAMDMEHALHIWTERERR 120
           GFNTKIEGTGKNMA                     DTNGKGKNAMDMEHALHIWTERERR
Sbjct: 61  GFNTKIEGTGKNMAVKREEGEGGGRPGVSSGVSTRDTNGKGKNAMDMEHALHIWTERERR 120

Query: 121 KKMKNMFSTLHGLLPKIPGKTDKASIVGEAIGYIKTLEDVVQKLETIKTERVRAHQWXXX 180
           KKMKNMFSTLHGLLPKIPGKTDKASIVGEAIGYIKTLEDVVQKLETIKTERVRAHQW   
Sbjct: 121 KKMKNMFSTLHGLLPKIPGKTDKASIVGEAIGYIKTLEDVVQKLETIKTERVRAHQWAAA 180

Query: 181 XXXXXXXNXXXXXXXXXXXQPPRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLQ 240
                  N           QPPRH                                 TLQ
Sbjct: 181 AAAAVAANGGGEGSSHSHSQPPRHATAVTVAVAEPAPVAAAVNAQAPQKKAAAAAAPTLQ 240

Query: 241 TWSAPNITLTMAGVDAFINMCLPRQRASFTTVAFVLEKHQIDVVTSTISADHDKSLFSVH 300
           TWSAPNITLTMAGVDAFINMCLPRQRASFTTVAFVLEKHQIDVVTSTISADHDKSLFSVH
Sbjct: 241 TWSAPNITLTMAGVDAFINMCLPRQRASFTTVAFVLEKHQIDVVTSTISADHDKSLFSVH 300

Query: 301 VRLNEASLQSTEGLTPEAKYKLAVSELMVRLAE 333
           VRLNEASLQSTEGLTPEAKYKLAVSELMVRLAE
Sbjct: 301 VRLNEASLQSTEGLTPEAKYKLAVSELMVRLAE 333



>Os04g0429300 Basic helix-loop-helix dimerisation region bHLH domain containing
           protein
          Length = 223

 Score = 82.0 bits (201), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 63/96 (65%), Gaps = 5/96 (5%)

Query: 238 TLQTWSAPNITLTMAGVDAFINMCLPRQRASFTTVA---FVLEKHQIDVVTSTISA-DHD 293
           +LQTW+ PN+T ++ G D FI + LP Q      VA    VLE+H IDVVT+T+SA +  
Sbjct: 124 SLQTWTGPNMTASLTGDDGFITLSLPHQGGQKNLVAGAVSVLERHHIDVVTATVSASEQG 183

Query: 294 KSLFSVHVRLNEASLQSTEGLTPEAKYKLAVSELMV 329
            +L S+H  L+  S  S++ LTP  K+KLA+SELM+
Sbjct: 184 DNLISLHCHLSPGS-SSSQNLTPLDKFKLAMSELML 218



>Os02g0547500 
          Length = 310

 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 57/92 (61%), Gaps = 1/92 (1%)

Query: 238 TLQTWSAPNITLTMAGVD-AFINMCLPRQRASFTTVAFVLEKHQIDVVTSTISADHDKSL 296
           TL  WS P++ L + G D AFIN+ + R+    T +  VLE+H IDVVT+ I++D  +SL
Sbjct: 219 TLMVWSGPSVVLNLCGGDQAFINVSVARRPGVLTMIVDVLERHSIDVVTAQIASDLSRSL 278

Query: 297 FSVHVRLNEASLQSTEGLTPEAKYKLAVSELM 328
           F++H  ++       +  T E  Y+LAVSE+M
Sbjct: 279 FTIHTSVDRERGMFMDTATAEEIYQLAVSEIM 310




 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 46/61 (75%)

Query: 111 LHIWTERERRKKMKNMFSTLHGLLPKIPGKTDKASIVGEAIGYIKTLEDVVQKLETIKTE 170
           +HI+ ERERR+K+KNMF+ L  L+P +  K DKA+IVGEAI +I++LE+ V  LE  K E
Sbjct: 94  MHIFAERERRRKIKNMFTDLRDLVPSLTNKADKATIVGEAISFIRSLEETVADLERRKRE 153

Query: 171 R 171
           R
Sbjct: 154 R 154



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.128    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,656,567
Number of extensions: 222300
Number of successful extensions: 704
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 727
Number of HSP's successfully gapped: 4
Length of query: 333
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 232
Effective length of database: 11,762,187
Effective search space: 2728827384
Effective search space used: 2728827384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)