Os04g0429300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0429300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 425.15 | 0.969 | 5.04 | -1.98 | 0.413 | 1.52 | -2.59 | 2.82 | -1.99 | 18.4 | 20.18 | 1419 | -- | -- |
| 428.66 | 0.964 | 5.13 | -2.75 | 0.43 | 1.58 | -2.52 | -- | -2.17 | 18.3 | 22.8 | 1388 | -- | -- |
| 436.53 | 0.973 | 5.05 | -2.02 | 0.545 | 1.55 | -- | 2.57 | -2.01 | 16.1 | 20.7 | 1336 | -- | -- |
| 435.94 | 0.972 | 5.04 | -2.62 | 0.559 | 1.51 | -- | -- | -1.75 | 15.5 | 28.01 | 1283 | -- | -- |
| 450.09 | 0.988 | 5.04 | -1.94 | -- | 1.49 | -- | 2.8 | -2 | -- | 20.4 | 1450 | -- | -- |
| 522.92 | 1.07 | 5.05 | -2.21 | 0.33 | -- | -2.77 | -- | -1.83 | 18.6 | -- | -- | -- | -- |
| 540.66 | 1.09 | 5.06 | -2.16 | 0.358 | -- | -- | -- | -1.83 | 16.9 | -- | -- | -- | -- |
| 451.37 | 0.989 | 5.03 | -2.6 | -- | 1.41 | -- | -- | -1.72 | -- | 28.38 | 1301 | -- | -- |
| 601.88 | 1.14 | 4.95 | -- | 0.523 | 1.12 | -- | -- | -1.36 | 15.7 | 30.59 | 1201 | -- | -- |
| 547.43 | 1.09 | 5.05 | -2.17 | -- | -- | -- | -- | -1.84 | -- | -- | -- | -- | -- |
| 663.53 | 1.2 | 5 | -- | 0.397 | -- | -- | -- | -1.59 | 16.7 | -- | -- | -- | -- |
| 616.92 | 1.16 | 4.95 | -- | -- | 1.04 | -- | -- | -1.38 | -- | 30.6 | 1203 | -- | -- |
| 671.91 | 1.21 | 5 | -- | -- | -- | -- | -- | -1.6 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 413.48 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 17 | 17 |
| 4 | 414.50 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 9 | 415.39 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 17 | 7 |
| 44 | 417.86 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 47 | 418.16 | temperature | 20.0 | 720 | > th | dose dependent | sin | 10 | NA |
| 56 | 418.70 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 15 | NA |
| 75 | 419.32 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 16 | 7 |
| 79 | 419.53 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 99 | 419.96 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 102 | 419.97 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 160 | 420.92 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 187 | 421.31 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 208 | 421.52 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 20 | 2 |
| 264 | 422.35 | temperature | 30.0 | 720 | < th | dose dependent | sin | 14 | NA |
| 265 | 422.35 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 18 | 5 |
| 303 | 422.80 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 19 | 5 |
| 336 | 423.15 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 20 | 2 |
| 348 | 423.26 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 19 | 5 |
| 374 | 423.53 | temperature | 10.0 | 1440 | > th | dose dependent | sin | 17 | NA |
| 444 | 424.09 | wind | 1.0 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 462 | 424.27 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 16 | 12 |
| 475 | 424.38 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 15 | 14 |
| 483 | 424.43 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 556 | 425.08 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 15 | 16 |
| 578 | 425.31 | temperature | 20.0 | 1440 | > th | dose dependent | no | NA | NA |
| 614 | 425.62 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 617 | 425.64 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 665 | 425.94 | temperature | 10.0 | 720 | > th | dose dependent | sin | 12 | NA |
| 705 | 426.20 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 14 | 22 |
| 813 | 426.99 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 840 | 427.23 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 7 | 21 |
| 850 | 427.30 | wind | 1.0 | 1440 | > th | dose independent | rect. | 4 | 2 |
| 856 | 427.33 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 859 | 427.34 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 14 | 22 |
| 863 | 427.35 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 6 | 13 |
| 934 | 427.74 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 993 | 428.04 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 20 |
| 999 | 428.06 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 22 |