BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0429300 Os04g0429300|AK107268
         (223 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0429300  Basic helix-loop-helix dimerisation region bHL...   333   7e-92
Os04g0429400  Basic helix-loop-helix dimerisation region bHL...    80   9e-16

>Os04g0429300 Basic helix-loop-helix dimerisation region bHLH domain containing
           protein
          Length = 223

 Score =  333 bits (853), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 180/223 (80%), Positives = 180/223 (80%)

Query: 1   DSACPHPQPPRKTDKATIVEATINYIKNLQDKIHKMEMLKVEREHXXXXXXXXXXXXXXX 60
           DSACPHPQPPRKTDKATIVEATINYIKNLQDKIHKMEMLKVEREH               
Sbjct: 1   DSACPHPQPPRKTDKATIVEATINYIKNLQDKIHKMEMLKVEREHAIALATAATATAAAS 60

Query: 61  XXXXXXXPPPSEEENEEHDSVVAAATREMALADMVHAWEQQQEXXXXXXXXXXXXXXXXX 120
                  PPPSEEENEEHDSVVAAATREMALADMVHAWEQQQE                 
Sbjct: 61  ADTALQAPPPSEEENEEHDSVVAAATREMALADMVHAWEQQQEAAATGGSHGGHAVPPPP 120

Query: 121 XXXXLQTWTGPNMTASLTGDDGFITLSLPHQGGQKNLVAGAVSVLERHHIDVVTATVSAS 180
               LQTWTGPNMTASLTGDDGFITLSLPHQGGQKNLVAGAVSVLERHHIDVVTATVSAS
Sbjct: 121 PAASLQTWTGPNMTASLTGDDGFITLSLPHQGGQKNLVAGAVSVLERHHIDVVTATVSAS 180

Query: 181 EQGDNLISLHCHLSPGSSSSQNLTPLDKFKLAMSELMLWVISV 223
           EQGDNLISLHCHLSPGSSSSQNLTPLDKFKLAMSELMLWVISV
Sbjct: 181 EQGDNLISLHCHLSPGSSSSQNLTPLDKFKLAMSELMLWVISV 223



>Os04g0429400 Basic helix-loop-helix dimerisation region bHLH domain containing
           protein
          Length = 333

 Score = 80.5 bits (197), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 62/95 (65%), Gaps = 5/95 (5%)

Query: 125 LQTWTGPNMTASLTGDDGFITLSLPHQGGQKNLVAGAVSVLERHHIDVVTATVSASEQGD 184
           LQTW+ PN+T ++ G D FI + LP Q      VA    VLE+H IDVVT+T+SA +   
Sbjct: 239 LQTWSAPNITLTMAGVDAFINMCLPRQRASFTTVA---FVLEKHQIDVVTSTISA-DHDK 294

Query: 185 NLISLHCHLSPGS-SSSQNLTPLDKFKLAMSELML 218
           +L S+H  L+  S  S++ LTP  K+KLA+SELM+
Sbjct: 295 SLFSVHVRLNEASLQSTEGLTPEAKYKLAVSELMV 329



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.126    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,562,339
Number of extensions: 198298
Number of successful extensions: 532
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 528
Number of HSP's successfully gapped: 2
Length of query: 223
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 126
Effective length of database: 11,971,043
Effective search space: 1508351418
Effective search space used: 1508351418
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 154 (63.9 bits)