FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0429400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.13 (0.0445) R2 : 0.343
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.45 (0.0937) R2dN8 : 0.444 R2N8 : 0.343
σ : 0.839
deviance : 322.72
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
296.11 0.808 6.17 0.0446 0.191 0.543 2.2 1.51 -1.55 8.33 0.7983 1380 -- --
298.14 0.804 6.17 0.101 0.173 0.759 2.05 -- -1.57 8.39 0.7296 1347 -- --
310.35 0.82 6.17 0.124 0.169 0.635 -- 1.32 -1.57 7.64 0.7999 1345 -- --
310.84 0.821 6.16 0.178 0.22 0.76 -- -- -1.59 6.92 0.8 1308 -- --
312.44 0.823 6.17 0.13 -- 0.655 -- 1.03 -1.57 -- 0.7944 1345 -- --
306.7 0.821 6.12 -0.0897 0.174 -- 2.12 -- -1.45 8.49 -- -- -- --
320.48 0.838 6.12 -0.0278 0.207 -- -- -- -1.45 6.5 -- -- -- --
313.37 0.824 6.16 0.177 -- 0.744 -- -- -1.58 -- 0.8371 1306 -- --
311.49 0.822 6.15 -- 0.221 0.762 -- -- -1.58 6.86 0.7361 1274 -- --
322.71 0.839 6.13 -0.0226 -- -- -- -- -1.45 -- -- -- -- --
320.5 0.837 6.12 -- 0.207 -- -- -- -1.45 6.51 -- -- -- --
313.95 0.825 6.16 -- -- 0.734 -- -- -1.58 -- 0.706 1278 -- --
322.72 0.839 6.13 -- -- -- -- -- -1.45 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 288.50 temperature 25.0 1440 < th dose independent rect. 20 1
3 289.60 humidity 70.0 1440 < th dose independent rect. 8 1
5 290.35 wind 3.0 1440 < th dose dependent rect. 10 1
6 290.40 humidity 80.0 14400 > th dose dependent rect. 13 1
7 290.52 wind 3.0 1440 < th dose independent rect. 8 3
10 290.66 wind 9.0 14400 > th dose independent rect. 10 1
11 290.74 atmosphere 1005.0 14400 < th dose independent rect. 23 1
13 290.84 wind 9.0 14400 < th dose independent rect. 7 4
15 290.88 temperature 25.0 1440 > th dose independent rect. 20 1
18 290.96 wind 9.0 14400 < th dose independent rect. 10 1
19 290.97 wind 3.0 4320 > th dose dependent rect. 8 2
20 290.99 precipitation 0.1 4320 > th dose independent rect. 4 2
21 291.05 wind 3.0 1440 > th dose independent rect. 8 3
22 291.09 precipitation 0.1 4320 < th dose independent rect. 4 2
24 291.09 precipitation 0.1 4320 < th dose dependent rect. 4 2
26 291.09 wind 3.0 1440 < th dose dependent rect. 8 5
27 291.14 precipitation 0.1 4320 > th dose dependent rect. 4 2
34 291.36 atmosphere 1005.0 14400 > th dose independent rect. 11 1
41 291.46 temperature 30.0 10 > th dose independent rect. 9 7
68 291.71 temperature 20.0 720 > th dose dependent rect. 5 1
70 291.72 radiation 20.0 30 > th dose dependent rect. 13 21
72 291.75 wind 9.0 14400 > th dose independent rect. 7 4
73 291.75 temperature 20.0 1440 > th dose dependent rect. 1 1
85 291.97 wind 3.0 1440 < th dose independent rect. 2 1
91 292.03 wind 7.0 14400 > th dose dependent rect. 12 1
107 292.15 precipitation 0.1 14400 > th dose dependent rect. 17 1
112 292.21 wind 9.0 14400 < th dose independent rect. 10 3
128 292.43 wind 1.0 1440 > th dose independent rect. 8 6
141 292.49 wind 5.0 4320 > th dose dependent rect. 20 7
154 292.58 humidity 70.0 1440 > th dose independent rect. 8 1
162 292.65 atmosphere 1005.0 14400 < th dose independent rect. 11 1
185 292.74 wind 3.0 1440 > th dose independent rect. 2 1
190 292.79 radiation 30.0 30 > th dose dependent sin 12 NA
199 292.84 wind 9.0 14400 < th dose independent rect. 12 1
210 292.90 wind 7.0 14400 > th dose dependent rect. 10 3
216 292.94 atmosphere 1005.0 14400 < th dose independent rect. 21 6
263 293.22 humidity 80.0 14400 > th dose independent rect. 13 1
285 293.32 wind 3.0 14400 < th dose independent rect. 5 1
292 293.34 temperature 30.0 10 > th dose independent sin 3 NA
294 293.36 wind 7.0 14400 > th dose dependent rect. 10 1
297 293.37 atmosphere 1005.0 14400 > th dose independent rect. 2 2
302 293.41 atmosphere 1005.0 14400 < th dose independent rect. 2 1
307 293.42 radiation 20.0 30 > th dose dependent rect. 15 19
308 293.44 precipitation 0.1 14400 > th dose independent rect. 17 1
313 293.48 temperature 25.0 1440 < th dose independent rect. 1 2
315 293.48 wind 3.0 14400 < th dose independent rect. 1 6
344 293.54 precipitation 0.1 1440 < th dose independent rect. 5 7
345 293.54 precipitation 0.1 1440 < th dose dependent rect. 5 7
348 293.55 radiation 40.0 10 > th dose independent rect. 13 21
355 293.60 wind 3.0 14400 > th dose independent rect. 5 1
371 293.63 humidity 80.0 1440 < th dose independent rect. 11 1
415 293.71 wind 1.0 1440 < th dose dependent rect. 13 2
425 293.75 wind 3.0 14400 < th dose independent rect. 1 8
434 293.77 humidity 70.0 1440 > th dose independent rect. 20 13
443 293.81 precipitation 0.1 1440 < th dose independent rect. 8 1
447 293.81 precipitation 0.1 1440 < th dose dependent rect. 8 1
449 293.82 temperature 30.0 30 < th dose independent rect. 3 10
451 293.83 humidity 70.0 1440 > th dose independent rect. 4 5
452 293.83 wind 3.0 14400 > th dose independent rect. 1 6
453 293.83 wind 3.0 1440 > th dose independent rect. 24 11
458 293.85 humidity 70.0 1440 > th dose independent rect. 24 9
460 293.86 wind 3.0 14400 < th dose independent rect. 1 3
486 293.95 humidity 80.0 1440 > th dose independent rect. 11 1
510 294.01 wind 3.0 14400 > th dose independent rect. 1 8
521 294.04 humidity 70.0 270 > th dose independent rect. 3 7
528 294.06 temperature 25.0 1440 < th dose independent rect. 18 9
531 294.07 precipitation 0.1 14400 < th dose independent rect. 17 1
536 294.07 precipitation 0.1 4320 > th dose independent rect. 1 16
537 294.07 precipitation 0.1 4320 < th dose independent rect. 1 16
538 294.07 precipitation 0.1 14400 < th dose dependent rect. 17 1
542 294.07 precipitation 0.1 4320 < th dose dependent rect. 1 16
545 294.08 humidity 90.0 1440 < th dose dependent rect. 1 9
549 294.11 wind 9.0 4320 < th dose dependent rect. 9 1
555 294.12 precipitation 0.1 4320 > th dose dependent rect. 1 16
557 294.13 wind 9.0 14400 < th dose independent rect. 2 11
558 294.13 wind 3.0 1440 < th dose independent rect. 24 11
561 294.13 radiation 1.0 14400 < th dose dependent rect. 19 6
566 294.14 temperature 15.0 10 > th dose dependent rect. 2 14
615 294.26 temperature 30.0 10 < th dose independent sin 3 NA
618 294.26 wind 1.0 1440 > th dose independent rect. 7 12
623 294.27 wind 3.0 1440 < th dose independent rect. 24 13
630 294.29 wind 3.0 14400 > th dose independent rect. 1 3
667 294.39 humidity 80.0 14400 > th dose independent rect. 4 1
671 294.41 humidity 80.0 14400 < th dose independent rect. 4 1
680 294.42 wind 1.0 1440 < th dose independent rect. 9 20
683 294.43 wind 3.0 14400 < th dose independent rect. 1 12
691 294.45 humidity 80.0 14400 > th dose independent rect. 13 3
711 294.48 radiation 30.0 90 > th dose independent rect. 15 18
730 294.54 atmosphere 1005.0 14400 > th dose independent rect. 23 1
749 294.59 wind 3.0 43200 < th dose dependent rect. 1 1
750 294.60 atmosphere 1005.0 14400 > th dose independent rect. 22 6
786 294.66 wind 1.0 1440 < th dose independent rect. 13 2
794 294.67 wind 3.0 4320 > th dose dependent rect. 19 15
841 294.76 wind 3.0 14400 > th dose independent rect. 1 12
898 294.88 radiation 20.0 4320 < th dose independent rect. 11 1
922 294.90 radiation 20.0 4320 > th dose independent rect. 11 1
932 294.92 radiation 10.0 10 < th dose independent sin 17 NA
933 294.92 temperature 25.0 1440 > th dose independent rect. 24 1
965 294.96 temperature 25.0 90 > th dose independent rect. 2 3
981 294.98 humidity 70.0 10 < th dose dependent rect. 13 21
982 294.99 radiation 40.0 10 > th dose independent sin 12 NA
994 295.00 wind 3.0 14400 < th dose dependent rect. 3 10