BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0416500 Os04g0416500|AK109870
(608 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0416500 Conserved hypothetical protein 964 0.0
Os02g0537800 Clp, N terminal domain containing protein 286 3e-77
Os11g0156800 Conserved hypothetical protein 140 4e-33
>Os04g0416500 Conserved hypothetical protein
Length = 608
Score = 964 bits (2492), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/608 (80%), Positives = 488/608 (80%)
Query: 1 AAVDRVRRGEAKQHDALRGAQVVSLRVSSFRDMPXXXXXXXXXXXXCLVKSRGARVLLVV 60
AAVDRVRRGEAKQHDALRGAQVVSLRVSSFRDMP CLVKSRGARVLLVV
Sbjct: 1 AAVDRVRRGEAKQHDALRGAQVVSLRVSSFRDMPREEAERRLAELRCLVKSRGARVLLVV 60
Query: 61 EDLKWXXXXXXXXXXXXXXXXXXXXXXYYCSVEHVVTEVRALASCDGGIWLVGFGTYQTY 120
EDLKW YYCSVEHVVTEVRALASCDGGIWLVGFGTYQTY
Sbjct: 61 EDLKWAADFWAAAHAGARRVGSGGGGGYYCSVEHVVTEVRALASCDGGIWLVGFGTYQTY 120
Query: 121 MKCRAGHPSLESMWGLQTLAVPAGSLALSLTCAFDDSALGAVNQSMKASPHTTDGNRPAP 180
MKCRAGHPSLESMWGLQTLAVPAGSLALSLTCAFDDSALGAVNQSMKASPHTTDGNRPAP
Sbjct: 121 MKCRAGHPSLESMWGLQTLAVPAGSLALSLTCAFDDSALGAVNQSMKASPHTTDGNRPAP 180
Query: 181 SCGPLLGGSHLLSRCCGGDCSAATTTHEHDTKAXXXXXXXXXXXXXXWLQHCRDQQLQES 240
SCGPLLGGSHLLSRCCGGDCSAATTTHEHDTKA WLQHCRDQQLQES
Sbjct: 181 SCGPLLGGSHLLSRCCGGDCSAATTTHEHDTKASLPRSFVSSSSLPSWLQHCRDQQLQES 240
Query: 241 THFADLGKTWGSICGKPSQRMTLHFXXXXXXXXXXXXYEXXXXXXXXXXXXXXSWLLADL 300
THFADLGKTWGSICGKPSQRMTLHF YE SWLLADL
Sbjct: 241 THFADLGKTWGSICGKPSQRMTLHFSAPVSPASSISSYEHGHGHQQQQHQPHHSWLLADL 300
Query: 301 DAKHPWKPKRXXXXXXXXXXXXXCSGASNGSVEVECRSRFKELNAENLKLLCAALEKEVP 360
DAKHPWKPKR CSGASNGSVEVECRSRFKELNAENLKLLCAALEKEVP
Sbjct: 301 DAKHPWKPKREDDDDEKAKSHDDCSGASNGSVEVECRSRFKELNAENLKLLCAALEKEVP 360
Query: 361 WQKEIVPEVASAVLQCRSGIAKRRDRSRSTEAKEETWLFFLGGDGHGKERVARELAGLVF 420
WQKEIVPEVASAVLQCRSGIAKRRDRSRSTEAKEETWLFFLGGDGHGKERVARELAGLVF
Sbjct: 361 WQKEIVPEVASAVLQCRSGIAKRRDRSRSTEAKEETWLFFLGGDGHGKERVARELAGLVF 420
Query: 421 GSRKXXXXXXXXXXXXXXXXXXXTEDHHXXXXXXXXXXXXXXEAYLERLYDAVSENPHRV 480
GSRK TEDHH EAYLERLYDAVSENPHRV
Sbjct: 421 GSRKSFLSVKLGASSSSPSASGSTEDHHRSKRPRTTTTSSASEAYLERLYDAVSENPHRV 480
Query: 481 ILIEDVEQGDHRWQVGVKEAIDRGVLRSQAGDEVGVGDAIIILSCESFEARSRAGSPLMN 540
ILIEDVEQGDHRWQVGVKEAIDRGVLRSQAGDEVGVGDAIIILSCESFEARSRAGSPLMN
Sbjct: 481 ILIEDVEQGDHRWQVGVKEAIDRGVLRSQAGDEVGVGDAIIILSCESFEARSRAGSPLMN 540
Query: 541 KKMKVEKEEANTSDHDHKLEIESGAPSSCFDLNLDMESDQAADELSSGDVCLLTAVDRVL 600
KKMKVEKEEANTSDHDHKLEIESGAPSSCFDLNLDMESDQAADELSSGDVCLLTAVDRVL
Sbjct: 541 KKMKVEKEEANTSDHDHKLEIESGAPSSCFDLNLDMESDQAADELSSGDVCLLTAVDRVL 600
Query: 601 LFRRQDEM 608
LFRRQDEM
Sbjct: 601 LFRRQDEM 608
>Os02g0537800 Clp, N terminal domain containing protein
Length = 686
Score = 286 bits (732), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 229/587 (39%), Positives = 276/587 (47%), Gaps = 87/587 (14%)
Query: 94 HVVTEVRALA----SCDGGIWLVGFGTYQTYMKCRAGHPSLESMWGLQTLAVPAGSLALS 149
H V EVRALA GG+WLVG GTYQT ++CR GHPSLE++WGL TLAVPAGSLALS
Sbjct: 114 HAVAEVRALACGGGGGGGGVWLVGHGTYQTNIRCRTGHPSLETLWGLHTLAVPAGSLALS 173
Query: 150 LTC----------AFDDSALGAVN-QSMKASPHTTDGNRPAPSCGPLLGGSHLLSRC--- 195
LTC A AVN QS K + +T P+P C LL + C
Sbjct: 174 LTCADADAAADDDDSGAMAAAAVNHQSAKGANGSTS---PSP-CLSLLDAAAAGGACSSG 229
Query: 196 -------------CGGDCSAATTT-HEHDTKAXXXXXXXXXXXXXXWLQHCRDQQLQEST 241
CGGDC+AAT WL HCRDQ + +
Sbjct: 230 QLAVMAAAVSGAYCGGDCAAATKALLPQSVVFMPPSATTTTTTIPPWLHHCRDQ--EPAA 287
Query: 242 HFADLGKTWGSI-CGKPSQRMTLHFXXXXXXX-XXXXXYEXXXXXXXXXXXXXXSWLLAD 299
H K W S G PS+R L+ YE WL+AD
Sbjct: 288 HM----KKWMSAHGGSPSRRTALNISSTAVSPCSSVSSYE----QYTRLHQPYQPWLVAD 339
Query: 300 LD-----AKHPW-----KPKRXXXXXXXXXXXXXCSGASNGSVEVEC-RSRFKELNAENL 348
D KHP+ R S ASNGSVEVE R RFKE++AENL
Sbjct: 340 DDDEAEETKHPYIAGDGGAGRLVPAAAKVVIKSDDSSASNGSVEVEWRRPRFKEVSAENL 399
Query: 349 KLLCAALEKEVPWQKEIVPEVASAVLQCRSGIAK---RRDRSRSTEAKEETWLFFLGGDG 405
K+LC ALEKEVPWQK IVPE+AS VL+CRSG+A R S + +KE TW+ FLGGD
Sbjct: 400 KVLCGALEKEVPWQKVIVPEIASTVLRCRSGMAAPAMARRSSSCSSSKEHTWMLFLGGDA 459
Query: 406 HGKERVARELAGLVFGSRKXXXX---------XXXXXXXXXXXXXXXTEDHHXX----XX 452
GK RVARELA LVFGS K TE H
Sbjct: 460 DGKLRVARELASLVFGSSKSFVSIGGAANASPPPSSSSSSPARSSGSTEQPHRSKRPWAE 519
Query: 453 XXXXXXXXXXEAYLERLYDAVSENPHRVILIEDVEQGDHRWQVGVKEAID--RGVLRSQA 510
+ +LE LYDAV +NP RVIL+E V++ D R G+++AI+ R
Sbjct: 520 TTTTTTSGRDQDHLEALYDAVRDNPRRVILMERVDRADARCHDGIRDAIERGVVRSRGGG 579
Query: 511 GDEVGVGDAIIILSCESFEARSRAGSPLMNKKMKVEKEEANTSDHDHKLEIESGAPSSCF 570
G+E +GDAI++LSCES S + + VEK + + DH K + + A SCF
Sbjct: 580 GEEAFLGDAIVVLSCESLNPSSTTPAKKAKTEYSVEKLDQDGDDHHGKEAVAAAASPSCF 639
Query: 571 DLNLDMESDQAADELSSGDV----------CLLTAVDRVLLFRRQDE 607
DLN+ M+ D A E LL AVDRVL FR E
Sbjct: 640 DLNMSMDDDDEAAEERCTGEEEEAGHHHHQLLLKAVDRVLFFRSIGE 686
>Os11g0156800 Conserved hypothetical protein
Length = 467
Score = 140 bits (352), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 103/274 (37%), Positives = 140/274 (51%), Gaps = 18/274 (6%)
Query: 337 RSRFKELNAENLKLLCAALEKEVPWQKEIVPEVASAVLQCRSGIAKRRDRSRS-TEAKEE 395
R +F ELNAENLK+LC ALE VP IVP++AS VLQCRSG+ K + R + +A
Sbjct: 198 RPKFIELNAENLKILCNALESRVPQHSNIVPDIASTVLQCRSGMKKMKLRHKEIIKASST 257
Query: 396 TWLFFLGGDGHGKERVARELAGLVFGSRKXXXXXXXXXXXXXXXXXXXTEDHHXXXXXXX 455
TWL F G D GK+ +A+ELA LVFGS E
Sbjct: 258 TWLLFQGRDVDGKKAMAQELAKLVFGSSTEFSSISFDELTSPYSDSSSGE----LTLKRQ 313
Query: 456 XXXXXXXEAYLERLYDAVSENPHRVILIEDVEQGDHRWQVGVKEAIDRGVLRSQAGDEVG 515
++ +RL + VS+NPH+VI+I D+EQ D ++ +K+AI G +R G+EV
Sbjct: 314 RSADSNEHSFAQRLCEIVSKNPHQVIVINDIEQLDQDSEISIKKAIANGRMRGCTGEEVD 373
Query: 516 VGDAIIILSC-ESFEARSRAGSPLMNKKMKVEKEEANTSDHDHKLEIESGAPSS---CFD 571
DAII+LS E F++RSRA + +V++ N +D + E G S D
Sbjct: 374 FEDAIIVLSYEEEFDSRSRA-----SSSPRVKQRLMNNNDDEESSSTEKGDNSPQRFSLD 428
Query: 572 LNLDMESDQAADE---LSSGDVCLLTAVDRVLLF 602
LN +E D+ DE L V + VD V F
Sbjct: 429 LNACLE-DEEEDEGFLLIDNGVGMHDIVDGVFFF 461
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.132 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,313,167
Number of extensions: 649292
Number of successful extensions: 1765
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1760
Number of HSP's successfully gapped: 5
Length of query: 608
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 501
Effective length of database: 11,448,903
Effective search space: 5735900403
Effective search space used: 5735900403
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)