FiT-DB / Search/ Help/ Sample detail

Os04g0416500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.76 (0.019) R2 : 0.134
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.335 (0.0399) R2dN8 : 0.173 R2N8 : 0.134
σ : 0.357
deviance : 58.49
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
42.5 0.306 8.8 0.0911 0.311 -0.301 -0.349 1.34 0.246 6.03 24.14 1208 -- --
44.15 0.309 8.77 0.189 0.305 -0.494 -0.42 -- 0.281 5.48 22.3 5573 -- --
42.79 0.305 8.8 0.0796 0.311 -0.304 -- 1.38 0.244 6.18 24.21 1200 -- --
44.44 0.31 8.78 0.198 0.326 -0.472 -- -- 0.3 6.12 22.13 8323 -- --
47.71 0.322 8.81 0.0552 -- -0.352 -- 1.42 0.235 -- 25.06 1266 -- --
47.29 0.322 8.75 0.443 0.321 -- -0.494 -- 0.376 5.6 -- -- -- --
47.85 0.324 8.75 0.441 0.319 -- -- -- 0.378 5.9 -- -- -- --
49.17 0.327 8.78 0.0927 -- -0.643 -- -- 0.256 -- 21.72 8375 -- --
44.57 0.311 8.78 -- 0.352 -0.607 -- -- 0.228 6.04 22.1 9618 -- --
53.13 0.341 8.75 0.451 -- -- -- -- 0.385 -- -- -- -- --
52.99 0.341 8.76 -- 0.326 -- -- -- 0.329 5.83 -- -- -- --
49.28 0.327 8.79 -- -- -0.718 -- -- 0.231 -- 21.8 8381 -- --
58.49 0.357 8.76 -- -- -- -- -- 0.335 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 42.14 wind 7.0 43200 > th dose dependent rect. 21 1
2 42.16 temperature 30.0 720 < th dose dependent rect. 6 12
3 42.26 temperature 10.0 720 > th dose dependent rect. 7 8
6 42.35 wind 9.0 43200 < th dose independent rect. 21 2
10 42.38 temperature 10.0 720 > th dose dependent rect. 3 16
15 42.42 temperature 30.0 720 < th dose dependent sin 0 NA
16 42.43 wind 9.0 43200 > th dose independent rect. 21 2
25 42.47 temperature 15.0 720 > th dose dependent sin 1 NA
31 42.48 temperature 30.0 720 < th dose dependent rect. 8 7
37 42.51 temperature 25.0 1440 < th dose dependent rect. 16 10
48 42.55 temperature 25.0 720 > th dose independent rect. 7 8
57 42.56 temperature 25.0 1440 < th dose dependent rect. 20 3
63 42.58 temperature 25.0 1440 < th dose dependent sin 15 NA
64 42.58 temperature 25.0 1440 < th dose dependent rect. 20 1
89 42.60 wind 3.0 43200 < th dose dependent rect. 20 4
130 42.65 humidity 80.0 43200 < th dose independent rect. 11 1
147 42.66 radiation 1.0 43200 < th dose dependent rect. 12 17
165 42.68 radiation 1.0 43200 < th dose dependent rect. 12 7
199 42.69 wind 5.0 43200 < th dose dependent rect. 17 7
217 42.70 radiation 1.0 43200 > th dose independent rect. 7 1
218 42.70 radiation 1.0 43200 < th dose independent rect. 7 1
255 42.72 radiation 1.0 43200 < th dose dependent sin 18 NA
270 42.73 precipitation 0.1 43200 > th dose independent rect. 8 2
273 42.73 precipitation 0.1 43200 > th dose dependent rect. 8 2
326 42.75 radiation 1.0 43200 < th dose dependent rect. 7 22
327 42.76 humidity 80.0 43200 > th dose independent rect. 11 2
336 42.76 radiation 1.0 43200 < th dose dependent rect. 7 12
345 42.76 temperature 15.0 270 > th dose dependent rect. 7 17
391 42.78 temperature 25.0 720 < th dose independent rect. 7 10
415 42.78 radiation 1.0 43200 < th dose dependent rect. 12 20
424 42.79 humidity 90.0 14400 > th dose dependent rect. 2 8
428 42.79 humidity 90.0 14400 > th dose dependent rect. 1 10
429 42.79 humidity 90.0 14400 > th dose dependent rect. 18 10
433 42.79 humidity 90.0 14400 > th dose dependent rect. 1 12
440 42.79 humidity 90.0 4320 > th dose dependent rect. 2 15
457 42.80 wind 3.0 43200 > th dose dependent rect. 19 1
472 42.80 radiation 1.0 43200 < th dose dependent rect. 18 22
499 42.81 temperature 15.0 270 > th dose dependent rect. 9 15
509 42.81 temperature 25.0 1440 < th dose dependent rect. 5 23
516 42.82 temperature 25.0 1440 < th dose dependent no NA NA
517 42.82 radiation 1.0 43200 < th dose dependent no NA NA
528 42.82 radiation 1.0 43200 < th dose dependent rect. 4 15
570 42.82 temperature 25.0 1440 < th dose dependent rect. 3 23
579 42.82 radiation 1.0 43200 < th dose dependent rect. 20 23
580 42.82 radiation 1.0 43200 < th dose dependent rect. 22 23
584 42.83 precipitation 0.1 43200 < th dose independent rect. 8 2
586 42.83 radiation 1.0 14400 > th dose independent rect. 9 5
587 42.83 temperature 25.0 720 < th dose independent rect. 7 8
588 42.83 radiation 1.0 43200 > th dose independent rect. 7 12
601 42.83 precipitation 0.1 43200 < th dose dependent rect. 8 2
628 42.83 temperature 25.0 1440 < th dose dependent rect. 1 23
631 42.83 temperature 25.0 1440 < th dose dependent rect. 18 23
636 42.83 radiation 1.0 43200 < th dose dependent rect. 16 23
640 42.84 radiation 1.0 43200 < th dose independent rect. 7 12
688 42.84 temperature 25.0 1440 < th dose dependent rect. 22 23
761 42.86 wind 1.0 14400 < th dose dependent rect. 19 9
805 42.87 radiation 1.0 14400 < th dose independent rect. 9 5
841 42.88 radiation 1.0 43200 < th dose independent sin 20 NA
846 42.88 radiation 1.0 43200 < th dose independent rect. 11 8
866 42.88 humidity 90.0 14400 > th dose dependent sin 8 NA
893 42.89 radiation 1.0 43200 > th dose independent sin 20 NA
928 42.89 temperature 10.0 1440 > th dose dependent rect. 19 7
941 42.89 radiation 1.0 43200 < th dose dependent rect. 18 15
963 42.90 radiation 1.0 43200 > th dose independent rect. 12 5
964 42.90 radiation 1.0 43200 < th dose independent rect. 12 5
967 42.90 radiation 1.0 43200 > th dose independent rect. 10 9