BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0416500 Os04g0416500|AK109870
(608 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G52490.1 | chr3:19455850-19458721 REVERSE LENGTH=816 191 8e-49
AT4G30350.1 | chr4:14848031-14850973 FORWARD LENGTH=925 100 2e-21
AT5G57710.1 | chr5:23384794-23388052 FORWARD LENGTH=991 68 2e-11
AT4G29920.1 | chr4:14632653-14635885 REVERSE LENGTH=1018 59 9e-09
AT5G57130.1 | chr5:23145291-23149395 FORWARD LENGTH=1029 54 2e-07
>AT3G52490.1 | chr3:19455850-19458721 REVERSE LENGTH=816
Length = 815
Score = 191 bits (486), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 116/279 (41%), Positives = 163/279 (58%), Gaps = 19/279 (6%)
Query: 326 GASNGSVEVE-CRSRFKELNAENLKLLCAALEKEVPWQKEIVPEVASAVLQCRSGIAKRR 384
+S+ ++E+E SRFKE+NAENL LCAALE +VPWQK++VPE+A VL+CRSG + R+
Sbjct: 551 ASSSDAMELEHASSRFKEMNAENLATLCAALESKVPWQKDLVPELAKTVLKCRSGSSTRK 610
Query: 385 DRSRSTEAKEETWLFFLGGDGHGKERVARELAGLVFGSRKXXXXXXXXXXXXXXXXXXXT 444
+ + KE+TW+FF G D KE++ARELA LVFGS+
Sbjct: 611 ING-NEDKKEDTWMFFQGLDVDAKEKIARELAKLVFGSQD--SFVSICLSSFSSTRSDSA 667
Query: 445 EDHHXXXXXXXXXXXXXXEAYLERLYDAVSENPHRVILIEDVEQGDHRWQVGVKEAIDRG 504
ED +Y+ER +AVS +P+RVIL+ED+EQ D+ QVG K A++RG
Sbjct: 668 EDLRNKRLRDEQSL-----SYIERFSEAVSLDPNRVILVEDIEQADYLSQVGFKRAVERG 722
Query: 505 VLRSQAGDEVGVGDAIIILSCESFEARSRAGSPLMNKKMKVEKEEANTSDHDHKLEIESG 564
+ + +G+E + DAI+ILSCE F +RSRA SP N+K SD + E ++
Sbjct: 723 RVCNSSGEEASLKDAIVILSCERFRSRSRACSPPSNQK----------SDGSDQPEDKNV 772
Query: 565 APSSCFDLNLDMESDQAADELSSGDVCLLTAVDRVLLFR 603
A DLNL ++S +E S ++ LL AVD F+
Sbjct: 773 ATCVALDLNLSIDSAYVCEEESCDEIGLLEAVDARFHFK 811
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 67/144 (46%), Gaps = 14/144 (9%)
Query: 15 DALRGAQVVSLRVSSFRDMPXXXXXXXXXXXXCLVKS-RGARVLLVVEDLKWXXXXXXXX 73
+ L+ + ++L SSF LVKS G V+L + DL W
Sbjct: 239 EVLKDVKFITLSFSSFGQPSRADVERKLEELETLVKSCVGKGVILNLGDLNWFVESRTRG 298
Query: 74 XXXXXXXXXXXXXXYYCSVEHVVTEVRALASC------DGGIWLVGFGTYQTYMKCRAGH 127
YC VEH++ E+ LA C G WL+G T QTY++C++G
Sbjct: 299 SSLYNNNDS------YCVVEHMIMEIGKLA-CGLVMGDHGRFWLMGLATSQTYVRCKSGQ 351
Query: 128 PSLESMWGLQTLAVPAGSLALSLT 151
PSLES+W L TL +PA S +L L+
Sbjct: 352 PSLESLWCLTTLTIPATSNSLRLS 375
>AT4G30350.1 | chr4:14848031-14850973 FORWARD LENGTH=925
Length = 924
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 135/551 (24%), Positives = 211/551 (38%), Gaps = 107/551 (19%)
Query: 96 VTEVRALAS-CDGGIWLVGFGTYQTYMKCRAGHPSLESMWGLQTLAVPAGSLALSLTCAF 154
V E+R L G + +G T +TY++C+ +PS+E+ W LQ + + A S SL F
Sbjct: 341 VVEMRKLLERYKGRLCFIGTATCETYLRCQVYYPSMENDWDLQAIPIAAKS---SLPAIF 397
Query: 155 DDSALGAVNQSMKASPHTTDGNRPAPSCGPLLGGSHLLSRCCGGDCSAATTTHEHDT-KA 213
N +M S + +P+ + S + C CS ++E+D K
Sbjct: 398 PRLGSNNNNNAMLLSNNIISIESISPTRSFQIPMSKM---SC---CSRCLQSYENDVAKV 451
Query: 214 XXXXXXXXXXXXXXWLQHCR-----DQQLQESTHFADLGKTWGSICGKPSQRMTLHFXXX 268
WLQ+ + D++L + +L K W +C + LH
Sbjct: 452 EKDLTGDNRSVLPQWLQNAKANDDGDKKLTKDQQIVELQKKWNDLC------LRLHPNQS 505
Query: 269 XXXXXXXXXYEXXXXXXXXXXXXXXSWLLADLDAKHPWKPKRXXXXXXXXXXXXXCSGAS 328
S + DL P + G S
Sbjct: 506 VSERIAPSTLSMMKINTRSDITPPGSPVGTDLVLGRPNR------------------GLS 547
Query: 329 NGSVEVECR-SRFKEL----NAENLKLLCAALEKEVPWQKEIVPEVASAVLQCRSGIAKR 383
S E + R +RF +L + + K L L K V WQ + VA+A+ +C+ G K
Sbjct: 548 --SPEKKTREARFGKLGDSFDIDLFKKLLKGLAKSVWWQHDAASSVAAAITECKHGNGK- 604
Query: 384 RDRSRSTEAKEETWLFFLGGDGHGKERVARELAGLVFGSRKXXXXXXXXXXXXXXXXXXX 443
+K + WL F G D GK ++A L+ LV GS+
Sbjct: 605 --------SKGDIWLMFTGPDRAGKSKMASALSDLVSGSQPITISLGSSSRMDDGLNIRG 656
Query: 444 TEDHHXXXXXXXXXXXXXXEAYLERLYDAVSENPHRVILIEDVEQGDHRWQVGVKEAIDR 503
+ L+R +AV NP VI++ED+++ D + VK AI+R
Sbjct: 657 -------------------KTALDRFAEAVRRNPFAVIVLEDIDEADILLRNNVKIAIER 697
Query: 504 GVLRSQAGDEVGVGDAIIILSCESF--EARSRAG------SPLMNK----------KMKV 545
G + G EV +G+ IIIL+ S A++ A L+NK K
Sbjct: 698 GRICDSYGREVSLGNVIIILTANSSLGSAKNVASIDETRLESLVNKGWELRLSVCNSSKT 757
Query: 546 EKEEAN--TSDHDHKLEIESGAPSSCFDLNLDMESDQAA------DELSSGDVC--LLTA 595
K + N SD+D + + CFDLN E D ++ D+ +G++ L+
Sbjct: 758 RKRKPNWLYSDNDQTKQRK----EICFDLNEAAEFDSSSDVTVEHDQEDNGNLVHKLVGL 813
Query: 596 VDRVLLFRRQD 606
VD +LFR D
Sbjct: 814 VDDAILFRPVD 824
>AT5G57710.1 | chr5:23384794-23388052 FORWARD LENGTH=991
Length = 990
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 22/183 (12%)
Query: 343 LNAENLKLLCAALEKEVPWQKEIVPEVASAVLQCRSGIAKRRDRSRSTEAKEETWLFFLG 402
L+ + K L + ++V WQ + VA+ V QC+ G KRR +K + WL F G
Sbjct: 604 LDIDLFKKLLKGMTEKVWWQNDAAAAVAATVSQCKLGNGKRR----GVLSKGDVWLLFSG 659
Query: 403 GDGHGKERVARELAGLVFGSRKXXXXXXXXXXXXXXXXXXXTEDHHXXXXXXXXXXXXXX 462
D GK ++ L+ LV+G+
Sbjct: 660 PDRVGKRKMVSALSSLVYGTNPIMIQLG------------------SRQDAGDGNSSFRG 701
Query: 463 EAYLERLYDAVSENPHRVILIEDVEQGDHRWQVGVKEAIDRGVLRSQAGDEVGVGDAIII 522
+ L+++ + V +P VIL+ED+++ D + +K+A+DRG +R G E+ +G+ I +
Sbjct: 702 KTALDKIAETVKRSPFSVILLEDIDEADMLVRGSIKQAMDRGRIRDSHGREISLGNVIFV 761
Query: 523 LSC 525
++
Sbjct: 762 MTA 764
>AT4G29920.1 | chr4:14632653-14635885 REVERSE LENGTH=1018
Length = 1017
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 20/167 (11%)
Query: 93 EHVVTEVRAL----ASCDGGIWLVGFGTYQTYMKCRAGHPSLESMWGLQTLAVPAGSLAL 148
+H+V E+ L ++ +WL+G +YQTYM+C+ P L+ W LQ +++P+G L+L
Sbjct: 377 DHLVEEIGRLVYDYSNTGAKVWLLGTASYQTYMRCQMKQPPLDVHWALQAVSIPSGGLSL 436
Query: 149 SLTCAFDDSALGAVNQSMKASPHTTDGNRPAPSCGPLLGGSHLLSRCCGGDCSAATTTHE 208
+L + + A +Q M+ P + L+ C G+C+ +E
Sbjct: 437 TLHASSSEMA----SQVMEMKPFRV---KEEEEGAREEEEEDKLNFC--GECAF---NYE 484
Query: 209 HDTKAXXXXXXXXXXXXXXWLQ-HCRDQQLQESTHFADLGKTWGSIC 254
+ KA WLQ H + + + + L K W C
Sbjct: 485 KEAKA---FISAQHKILPPWLQPHGDNNNINQKDELSGLRKKWNRFC 528
>AT5G57130.1 | chr5:23145291-23149395 FORWARD LENGTH=1029
Length = 1028
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 16/114 (14%)
Query: 49 VKSRGARVLLVVEDLKWXXXXXXXXXXXXXXXXXXXXXXYYCSVEHVVTEV-RALASCDG 107
+ + G ++ DLKW Y ++H+V E+ + + C+
Sbjct: 367 LTTSGKNAIIFTGDLKWTVKEITNNNSGGINEISSS----YSPLDHLVEEIGKLITECND 422
Query: 108 ----------GIWLVGFGTYQTYMKCRAGHPSLESMWGLQTLAVP-AGSLALSL 150
+W++G ++QTYM+C+ PSLE++W L ++VP + +L LSL
Sbjct: 423 DGDDDDCKTRKVWVMGTASFQTYMRCQMRQPSLETLWALHPVSVPSSANLGLSL 476
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.132 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,542,118
Number of extensions: 378696
Number of successful extensions: 1015
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1010
Number of HSP's successfully gapped: 7
Length of query: 608
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 504
Effective length of database: 8,255,305
Effective search space: 4160673720
Effective search space used: 4160673720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)