BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0415000 Os04g0415000|AK108662
         (116 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0415000  Conserved hypothetical protein                      177   1e-45
Os02g0536500  Conserved hypothetical protein                       88   1e-18

>Os04g0415000 Conserved hypothetical protein
          Length = 116

 Score =  177 bits (450), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 91/116 (78%), Positives = 91/116 (78%)

Query: 1   MSRSNKKSSRGIDLKLNLSLPARGDSSSRRAMAADXXXXXXXXXXXXXXHGLQWSNSPEA 60
           MSRSNKKSSRGIDLKLNLSLPARGDSSSRRAMAAD              HGLQWSNSPEA
Sbjct: 1   MSRSNKKSSRGIDLKLNLSLPARGDSSSRRAMAADEESSPSSCLSSENEHGLQWSNSPEA 60

Query: 61  TSMVLAACPRCFIYVMLPQDDPRCPQCKSPVILDFLQQDXXXXXXXXXXXRKTRRG 116
           TSMVLAACPRCFIYVMLPQDDPRCPQCKSPVILDFLQQD           RKTRRG
Sbjct: 61  TSMVLAACPRCFIYVMLPQDDPRCPQCKSPVILDFLQQDNGNNNANSNSSRKTRRG 116



>Os02g0536500 Conserved hypothetical protein
          Length = 123

 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 58/92 (63%), Gaps = 6/92 (6%)

Query: 12  IDLKLNLSLPARGDSSSRRA------MAADXXXXXXXXXXXXXXHGLQWSNSPEATSMVL 65
           +DLKLNLSLPA   + S  A       +                  LQWS+SPEATSMVL
Sbjct: 15  LDLKLNLSLPAVARAVSPAADDESSPSSCLSSESELRQQHGGGGGQLQWSDSPEATSMVL 74

Query: 66  AACPRCFIYVMLPQDDPRCPQCKSPVILDFLQ 97
           AACPRCF+YVML + DPRCP+C+SPVILDFL 
Sbjct: 75  AACPRCFLYVMLAEADPRCPKCRSPVILDFLH 106



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.131    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,046,437
Number of extensions: 87927
Number of successful extensions: 222
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 2
Length of query: 116
Length of database: 17,035,801
Length adjustment: 83
Effective length of query: 33
Effective length of database: 12,702,039
Effective search space: 419167287
Effective search space used: 419167287
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)