Os04g0415000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0415000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.16 | 0.388 | 11.4 | -1.96 | 0.714 | 1.25 | 0.283 | -7.46 | 0.245 | 3.51 | 24.32 | 3339 | -- | -- |
| 83.78 | 0.426 | 11.2 | -0.353 | 0.712 | 0.863 | 0.188 | -- | 0.494 | 3.13 | 14.79 | 9093 | -- | -- |
| 68.14 | 0.384 | 11.4 | -2.05 | 0.716 | 1.34 | -- | -8.15 | 0.268 | 3.5 | 24.9 | 3308 | -- | -- |
| 83.74 | 0.426 | 11.2 | -0.306 | 0.721 | 0.764 | -- | -- | 0.491 | 3.12 | 17.12 | 9086 | -- | -- |
| 93.63 | 0.451 | 11.4 | -1.98 | -- | 1.27 | -- | -6.52 | 0.199 | -- | 24.1 | 2658 | -- | -- |
| 96.1 | 0.46 | 11.1 | 0.124 | 0.737 | -- | 0.215 | -- | 0.756 | 3.05 | -- | -- | -- | -- |
| 96.25 | 0.459 | 11.1 | 0.12 | 0.737 | -- | -- | -- | 0.754 | 3 | -- | -- | -- | -- |
| 111.16 | 0.491 | 11.2 | -0.313 | -- | 0.82 | -- | -- | 0.485 | -- | 17.79 | 8326 | -- | -- |
| 85 | 0.429 | 11.2 | -- | 0.708 | 0.56 | -- | -- | 0.568 | 3.12 | 21.2 | 7868 | -- | -- |
| 127.39 | 0.527 | 11.1 | 0.151 | -- | -- | -- | -- | 0.773 | -- | -- | -- | -- | -- |
| 96.63 | 0.46 | 11.1 | -- | 0.739 | -- | -- | -- | 0.741 | 3.01 | -- | -- | -- | -- |
| 112.29 | 0.494 | 11.2 | -- | -- | 0.607 | -- | -- | 0.557 | -- | 22.59 | 8318 | -- | -- |
| 127.99 | 0.528 | 11.1 | -- | -- | -- | -- | -- | 0.757 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.19 | radiation | 20 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 2 | 65.31 | radiation | 20 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 3 | 65.45 | radiation | 10 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 35 | 65.76 | radiation | 30 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 43 | 65.89 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 210 | 66.15 | radiation | 20 | 43200 | < th | dose independent | sin | 9 | NA |
| 229 | 66.17 | radiation | 10 | 43200 | > th | dose dependent | sin | 10 | NA |
| 260 | 66.20 | radiation | 40 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 283 | 66.29 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 387 | 66.44 | radiation | 40 | 43200 | < th | dose dependent | rect. | 3 | 7 |
| 394 | 66.45 | radiation | 40 | 43200 | < th | dose dependent | rect. | 23 | 11 |
| 484 | 66.54 | radiation | 40 | 43200 | > th | dose independent | sin | 10 | NA |
| 575 | 66.66 | radiation | 20 | 43200 | > th | dose independent | sin | 10 | NA |
| 858 | 66.99 | radiation | 40 | 43200 | < th | dose dependent | sin | 9 | NA |
| 962 | 67.07 | radiation | 40 | 43200 | > th | dose dependent | no | NA | NA |