BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0415000 Os04g0415000|AK108662
         (116 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G06270.1  | chr5:1912895-1913263 FORWARD LENGTH=123             76   3e-15
AT3G11600.1  | chr3:3667337-3667690 FORWARD LENGTH=118             70   3e-13
AT5G22270.1  | chr5:7372487-7372768 REVERSE LENGTH=94              49   6e-07

>AT5G06270.1 | chr5:1912895-1913263 FORWARD LENGTH=123
          Length = 122

 Score = 76.3 bits (186), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 30/48 (62%), Positives = 39/48 (81%)

Query: 51  GLQWSNSPEATSMVLAACPRCFIYVMLPQDDPRCPQCKSPVILDFLQQ 98
            +++S SPE TSMVL  CPRC +YVML +DDP+CP+CKS V+LDFL +
Sbjct: 54  SVRYSTSPETTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHE 101



>AT3G11600.1 | chr3:3667337-3667690 FORWARD LENGTH=118
          Length = 117

 Score = 69.7 bits (169), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/98 (39%), Positives = 53/98 (54%), Gaps = 3/98 (3%)

Query: 1  MSRSNKKSSRGIDLKLNLSLPARGDSSSRRAMAADXXXXXXXXXXXXXXHGLQWSNSPEA 60
          MSR NK   + ++L+LNLS P     +S+ ++                        +   
Sbjct: 1  MSRRNKNGPK-LELRLNLSPPP--SQASQMSLVRSPNRSNTTSPSSCVSSETNQEENETI 57

Query: 61 TSMVLAACPRCFIYVMLPQDDPRCPQCKSPVILDFLQQ 98
          TSMVL  CPRC +YVML  DDP+CP+CKS V+LDFLQ+
Sbjct: 58 TSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLQE 95



>AT5G22270.1 | chr5:7372487-7372768 REVERSE LENGTH=94
          Length = 93

 Score = 48.9 bits (115), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 28/39 (71%), Gaps = 1/39 (2%)

Query: 62 SMVLAACPRCFIYVMLP-QDDPRCPQCKSPVILDFLQQD 99
          SMV+  CP C +Y++   ++DPRCP+C S V+LDFL  +
Sbjct: 48 SMVVVGCPNCIMYIITSLENDPRCPRCNSHVLLDFLTGN 86



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.131    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,843,120
Number of extensions: 50091
Number of successful extensions: 129
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 3
Length of query: 116
Length of database: 11,106,569
Length adjustment: 85
Effective length of query: 31
Effective length of database: 8,776,209
Effective search space: 272062479
Effective search space used: 272062479
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)