BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0413600 Os04g0413600|AK121192
         (151 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0413600  Similar to 40S ribosomal protein S14 (Clone MCH2)   258   1e-69
Os02g0534800  Similar to 40S ribosomal protein S14 (Clone MCH2)   258   1e-69
Os02g0162500  Similar to 40S ribosomal protein S14                249   4e-67
Os02g0105700                                                       67   4e-12

>Os04g0413600 Similar to 40S ribosomal protein S14 (Clone MCH2)
          Length = 151

 Score =  258 bits (658), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 128/140 (91%), Positives = 128/140 (91%)

Query: 1   MSGRKKTREPKEENVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM 60
           MSGRKKTREPKEENVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM
Sbjct: 1   MSGRKKTREPKEENVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM 60

Query: 61  KVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALA 120
           KVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRA            AQSALRALA
Sbjct: 61  KVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 120

Query: 121 RSGMKIGRIEDVTPVPTDST 140
           RSGMKIGRIEDVTPVPTDST
Sbjct: 121 RSGMKIGRIEDVTPVPTDST 140



>Os02g0534800 Similar to 40S ribosomal protein S14 (Clone MCH2)
          Length = 151

 Score =  258 bits (658), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 128/140 (91%), Positives = 128/140 (91%)

Query: 1   MSGRKKTREPKEENVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM 60
           MSGRKKTREPKEENVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM
Sbjct: 1   MSGRKKTREPKEENVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM 60

Query: 61  KVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALA 120
           KVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRA            AQSALRALA
Sbjct: 61  KVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 120

Query: 121 RSGMKIGRIEDVTPVPTDST 140
           RSGMKIGRIEDVTPVPTDST
Sbjct: 121 RSGMKIGRIEDVTPVPTDST 140



>Os02g0162500 Similar to 40S ribosomal protein S14
          Length = 150

 Score =  249 bits (637), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 123/137 (89%), Positives = 125/137 (91%)

Query: 4   RKKTREPKEENVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVK 63
           ++KTREPKEENVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVK
Sbjct: 3   KRKTREPKEENVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVK 62

Query: 64  ADRDESSPYAAMLASQDVAQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSG 123
           ADRDESSPYAAMLASQDVAQRCKELGITALHIKLRA            AQSALRALARSG
Sbjct: 63  ADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSG 122

Query: 124 MKIGRIEDVTPVPTDST 140
           MKIGRIEDVTPVPTDST
Sbjct: 123 MKIGRIEDVTPVPTDST 139



>Os02g0105700 
          Length = 269

 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 62/113 (54%), Gaps = 18/113 (15%)

Query: 20  TVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLASQ 79
           T+R+ + V G  +I +  ++   +   L+ +  +V   GGMK+KAD DESSPYAAML SQ
Sbjct: 159 TLRQDDPVGGGMNIKSDCDEPSPYAAILASQYYVV--GGGMKIKADCDESSPYAAMLVSQ 216

Query: 80  DVAQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALR--ALARSGMKIGRIE 130
           DVA  CK    T                    AQSALR  ALARSGM IGRI+
Sbjct: 217 DVALCCKVCNKT--------------NTPGPDAQSALRALALARSGMNIGRID 255



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.132    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,877,275
Number of extensions: 119902
Number of successful extensions: 328
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 326
Number of HSP's successfully gapped: 4
Length of query: 151
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 59
Effective length of database: 12,232,113
Effective search space: 721694667
Effective search space used: 721694667
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 151 (62.8 bits)