Os04g0413600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 40S ribosomal protein S14 (Clone MCH2).
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Os04g0413600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 40S ribosomal protein S14 (Clone MCH2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 120.49 | 0.516 | 11.8 | -1.09 | 0.911 | 0.783 | 0.545 | -2.13 | -0.638 | 16 | 20.52 | 2721 | -- | -- |
| 127.65 | 0.526 | 11.7 | -0.693 | 0.906 | 1.17 | 0.558 | -- | -0.518 | 15.8 | 19.7 | 2593 | -- | -- |
| 121.31 | 0.513 | 11.8 | -1.1 | 0.914 | 0.788 | -- | -2.15 | -0.637 | 15.9 | 20.5 | 2714 | -- | -- |
| 128.86 | 0.529 | 11.7 | -0.703 | 0.923 | 1.2 | -- | -- | -0.527 | 15.8 | 19.71 | 2593 | -- | -- |
| 166.01 | 0.6 | 11.8 | -1.12 | -- | 0.756 | -- | -2.18 | -0.678 | -- | 20.8 | 3020 | -- | -- |
| 154.44 | 0.583 | 11.6 | -0.0939 | 0.855 | -- | 0.884 | -- | -0.25 | 16.1 | -- | -- | -- | -- |
| 156.61 | 0.586 | 11.6 | -0.0837 | 0.859 | -- | -- | -- | -0.245 | 16 | -- | -- | -- | -- |
| 171.45 | 0.61 | 11.7 | -1.14 | -- | 1.32 | -- | -- | -0.609 | -- | 19 | 11674 | -- | -- |
| 138.98 | 0.549 | 11.7 | -- | 0.866 | 0.923 | -- | -- | -0.445 | 15.6 | 20.59 | 2431 | -- | -- |
| 196.85 | 0.656 | 11.6 | -0.119 | -- | -- | -- | -- | -0.268 | -- | -- | -- | -- | -- |
| 156.8 | 0.586 | 11.6 | -- | 0.86 | -- | -- | -- | -0.235 | 16 | -- | -- | -- | -- |
| 178.84 | 0.623 | 11.7 | -- | -- | 0.839 | -- | -- | -0.406 | -- | 20.6 | 1594 | -- | -- |
| 197.22 | 0.655 | 11.6 | -- | -- | -- | -- | -- | -0.254 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 116.70 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 18 |
| 2 | 116.89 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 16 |
| 13 | 117.73 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 25 | 118.34 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 28 | 118.75 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 30 | 118.78 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 52 | 119.61 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 55 | 119.73 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 3 |
| 56 | 119.74 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 4 |
| 59 | 119.83 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 60 | 119.83 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 90 | 120.17 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 91 | 120.19 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 8 |
| 94 | 120.20 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 10 |
| 97 | 120.22 | temperature | 20 | 90 | > th | dose dependent | sin | 2 | NA |
| 103 | 120.29 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 4 |
| 108 | 120.35 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 114 | 120.39 | humidity | 90 | 43200 | > th | dose dependent | rect. | 12 | 3 |
| 119 | 120.42 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 130 | 120.43 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 170 | 120.82 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 175 | 120.85 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 181 | 120.88 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 186 | 120.91 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 238 | 121.20 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 259 | 121.30 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 261 | 121.32 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 266 | 121.34 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 3 |
| 275 | 121.39 | humidity | 80 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 324 | 121.59 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 336 | 121.65 | temperature | 15 | 4320 | > th | dose dependent | rect. | 19 | 4 |
| 341 | 121.68 | humidity | 90 | 43200 | < th | dose independent | rect. | 12 | 3 |
| 403 | 121.85 | radiation | 1 | 14400 | > th | dose independent | sin | 12 | NA |
| 436 | 121.92 | humidity | 80 | 43200 | > th | dose independent | rect. | 23 | 9 |
| 495 | 122.07 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 7 |
| 509 | 122.10 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 14 |
| 525 | 122.14 | humidity | 90 | 14400 | > th | dose dependent | rect. | 16 | 10 |
| 530 | 122.16 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 2 |
| 564 | 122.23 | humidity | 80 | 43200 | < th | dose independent | rect. | 23 | 10 |
| 618 | 122.33 | radiation | 1 | 14400 | < th | dose independent | sin | 12 | NA |
| 654 | 122.37 | humidity | 90 | 14400 | > th | dose dependent | sin | 16 | NA |
| 688 | 122.46 | humidity | 80 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 767 | 122.58 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 19 |
| 773 | 122.58 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 22 |
| 798 | 122.62 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 22 |
| 799 | 122.63 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 804 | 122.64 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 805 | 122.64 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 848 | 122.70 | radiation | 1 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 849 | 122.70 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 8 |
| 858 | 122.71 | humidity | 90 | 14400 | > th | dose independent | sin | 16 | NA |
| 885 | 122.72 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 14 |