Os02g0534800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 40S ribosomal protein S14 (Clone MCH2).
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Os02g0534800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 40S ribosomal protein S14 (Clone MCH2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 73.78 | 0.404 | 12.4 | 0.0947 | 0.944 | 0.504 | 0.726 | -2.58 | -0.145 | 17.1 | 20.6 | 2715 | -- | -- |
| 81.45 | 0.42 | 12.3 | 0.492 | 0.945 | 1.2 | 0.968 | -- | -0.0513 | 17 | 18.79 | 2470 | -- | -- |
| 75.09 | 0.404 | 12.4 | 0.0825 | 0.954 | 0.502 | -- | -2.64 | -0.147 | 17.2 | 20.6 | 2710 | -- | -- |
| 83.61 | 0.426 | 12.3 | 0.518 | 0.957 | 1.15 | -- | -- | -0.0159 | 17.1 | 18.81 | 2559 | -- | -- |
| 121.77 | 0.514 | 12.4 | 0.0302 | -- | 0.422 | -- | -2.88 | -0.16 | -- | 20.5 | 3692 | -- | -- |
| 102.22 | 0.474 | 12.3 | 1.07 | 0.905 | -- | 1.05 | -- | 0.206 | 17.2 | -- | -- | -- | -- |
| 104.94 | 0.48 | 12.3 | 1.07 | 0.913 | -- | -- | -- | 0.21 | 17.3 | -- | -- | -- | -- |
| 129.71 | 0.53 | 12.3 | 0.566 | -- | 1.06 | -- | -- | -0.0147 | -- | 19.08 | 2136 | -- | -- |
| 86.47 | 0.433 | 12.3 | -- | 0.943 | 1.36 | -- | -- | -0.149 | 17.2 | 18.7 | 11201 | -- | -- |
| 148.48 | 0.569 | 12.2 | 1.04 | -- | -- | -- | -- | 0.188 | -- | -- | -- | -- | -- |
| 135.03 | 0.544 | 12.3 | -- | 0.895 | -- | -- | -- | 0.0913 | 17.3 | -- | -- | -- | -- |
| 128.83 | 0.529 | 12.3 | -- | -- | 1.24 | -- | -- | -0.104 | -- | 16.1 | 24112 | -- | -- |
| 176.85 | 0.621 | 12.3 | -- | -- | -- | -- | -- | 0.0725 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.33 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 9 |
| 6 | 73.47 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 9 |
| 8 | 73.49 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 33 | 73.84 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 46 | 74.00 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 56 | 74.11 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 84 | 74.33 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 195 | 75.35 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 200 | 75.37 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 292 | 75.92 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 323 | 76.07 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 334 | 76.10 | temperature | 20 | 4320 | > th | dose independent | rect. | 5 | 23 |
| 347 | 76.17 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 349 | 76.17 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 23 |
| 360 | 76.21 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 23 |
| 362 | 76.22 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 23 |
| 363 | 76.23 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 374 | 76.30 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 23 |
| 376 | 76.31 | temperature | 20 | 4320 | < th | dose independent | rect. | 3 | 23 |
| 384 | 76.35 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 446 | 76.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 492 | 76.84 | temperature | 15 | 4320 | > th | dose dependent | rect. | 19 | 4 |
| 496 | 76.86 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 506 | 76.88 | temperature | 15 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 530 | 76.95 | temperature | 25 | 4320 | < th | dose dependent | rect. | 19 | 4 |
| 681 | 77.31 | wind | 3 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 727 | 77.41 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 16 |
| 784 | 77.53 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 10 |
| 832 | 77.61 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 838 | 77.63 | humidity | 90 | 14400 | > th | dose dependent | sin | 2 | NA |
| 850 | 77.65 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 21 |
| 860 | 77.67 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 22 |
| 880 | 77.70 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 5 |
| 897 | 77.73 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 6 |
| 911 | 77.75 | humidity | 90 | 14400 | > th | dose independent | sin | 4 | NA |
| 941 | 77.79 | humidity | 90 | 14400 | > th | dose independent | rect. | 15 | 23 |
| 949 | 77.80 | humidity | 90 | 14400 | > th | dose independent | rect. | 11 | 23 |
| 950 | 77.80 | temperature | 15 | 4320 | > th | dose dependent | sin | 15 | NA |
| 971 | 77.83 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |