BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0412100 Os04g0412100|AK108223
         (217 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0412100  Conserved hypothetical protein                      290   4e-79
Os02g0532800  Helix-turn-helix, Fis-type domain containing p...    97   8e-21

>Os04g0412100 Conserved hypothetical protein
          Length = 217

 Score =  290 bits (743), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 152/217 (70%), Positives = 152/217 (70%)

Query: 1   MATSGDVEEVPEPGMDHPAEPCMGVGGDQLVPTTEEISLPLAAETTSDHHEAAQLXXXXX 60
           MATSGDVEEVPEPGMDHPAEPCMGVGGDQLVPTTEEISLPLAAETTSDHHEAAQL     
Sbjct: 1   MATSGDVEEVPEPGMDHPAEPCMGVGGDQLVPTTEEISLPLAAETTSDHHEAAQLEQSAE 60

Query: 61  XXXXXXXXXXXXXXXXXDSSEAAAVIPKHXXXXXXXXXXXXXXXXXXXXXXXXDDGLQGE 120
                            DSSEAAAVIPKH                        DDGLQGE
Sbjct: 61  TSTSESESEEVAAKTTSDSSEAAAVIPKHAAEGSSTASEEEQVAKKELKEAEEDDGLQGE 120

Query: 121 SARERLKRHRREMAGRVWVPDMWGQEKLLKDWVDCAAFDRPLVPPDLLTARRALVAECCX 180
           SARERLKRHRREMAGRVWVPDMWGQEKLLKDWVDCAAFDRPLVPPDLLTARRALVAECC 
Sbjct: 121 SARERLKRHRREMAGRVWVPDMWGQEKLLKDWVDCAAFDRPLVPPDLLTARRALVAECCA 180

Query: 181 XXXXXXXXXXXXXXXXXXQIQPSPGAKKLLLIIELDY 217
                             QIQPSPGAKKLLLIIELDY
Sbjct: 181 RRPDRTTTPPGPDDDAARQIQPSPGAKKLLLIIELDY 217



>Os02g0532800 Helix-turn-helix, Fis-type domain containing protein
          Length = 195

 Score = 97.4 bits (241), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 49/64 (76%), Positives = 53/64 (82%), Gaps = 1/64 (1%)

Query: 116 GLQGESARERLKRHRREMAGRVWVPDMWGQEKLLKDWVDCAAFDRPLVPP-DLLTARRAL 174
           G + ESARERLKRHR EMAGRV +P+MWGQE+LLKDWVDCA FDRPL     LLTAR AL
Sbjct: 109 GEERESARERLKRHRTEMAGRVRIPEMWGQERLLKDWVDCAVFDRPLAATRGLLTARDAL 168

Query: 175 VAEC 178
           VAEC
Sbjct: 169 VAEC 172



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.134    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,872,738
Number of extensions: 191071
Number of successful extensions: 424
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 419
Number of HSP's successfully gapped: 2
Length of query: 217
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 120
Effective length of database: 11,971,043
Effective search space: 1436525160
Effective search space used: 1436525160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)