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Os02g0532800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Helix-turn-helix, Fis-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.5 (0.0409) R2 : 0.952
β1 : 0.167 (0.15) R2dD : 0.000138 R2D : -0.00318
β2 : 3.14 (0.169) R2dC : 0.106 R2C : 0.467
β3 : -8.08 (0.202) R2dE : 0.487 R2E : 0.843
β4 : 3.47 (0.71) R2dD*C : 0.00805 R2D*C : -0.00758
β5 : 5.22 (0.992) R2dD*E : 0.00945 R2D*E : -0.0149
γ1 : 0.31 (0.0874) R2dN8 : 0.00181 R2N8 : -0.00226
σ : 0.764
deviance : 264.73
__
_____
C
peak time of C : 9.4
E
wheather : temperature
threshold : 9.397
memory length : 264
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.3
open length of G : 8.08

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
264.73 0.764 12.5 0.167 3.14 -8.08 3.47 5.22 0.31 9.4 9.397 264 17.3 8.08
284.89 0.786 12.5 -0.0756 3.08 -8.06 1.55 -- 0.279 9.06 8.958 247 17.4 8.27
295.2 0.8 12.5 0.52 3.31 -8.32 -- 4.59 0.46 9.19 11.4 258 17.5 8.08
281.52 0.781 12.5 0.123 3.11 -8.02 -- -- 0.274 9.15 9.054 247 17.4 8.27
442.68 0.98 12.7 0.283 -- -10.3 -- 4.66 0.222 -- 9.379 249 16.7 8.78
826.08 1.35 12.4 -0.262 8.72 -- 0.886 -- -0.00609 10.6 -- -- -- --
829.31 1.35 12.4 -0.226 8.72 -- -- -- -0.00322 10.6 -- -- -- --
348.61 0.87 12.6 0.523 -- -10.9 -- -- 0.313 -- 6.322 304 16.5 8.09
281 0.781 12.5 -- 3.12 -7.9 -- -- 0.249 9.25 9.147 246 17.4 8.25
5501.47 3.47 12.7 -0.385 -- -- -- -- -0.0434 -- -- -- -- --
830.65 1.35 12.4 -- 8.72 -- -- -- 0.022 10.6 -- -- -- --
323.38 0.838 12.6 -- -- -10.6 -- -- 0.148 -- 2.32 321 16.2 8.47
5505.37 3.46 12.6 -- -- -- -- -- -7e-04 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 288.88 temperature 10.0 270 > th dose dependent rect. 17 8
12 358.90 temperature 20.0 270 > th dose independent rect. 17 8
17 374.62 temperature 10.0 270 > th dose dependent rect. 18 17
57 430.66 temperature 20.0 90 > th dose independent rect. 19 18
85 446.11 atmosphere 1015.0 270 < th dose independent rect. 17 8
86 447.06 atmosphere 1015.0 270 < th dose independent rect. 18 17
112 466.14 temperature 20.0 270 > th dose independent rect. 6 19
116 468.84 radiation 10.0 270 < th dose independent rect. 16 9
127 471.79 precipitation 0.1 270 < th dose independent rect. 11 7
128 471.79 precipitation 0.1 270 < th dose dependent rect. 11 7
130 472.47 temperature 30.0 270 < th dose dependent rect. 22 8
141 474.17 radiation 40.0 270 < th dose dependent rect. 16 9
143 474.98 precipitation 0.1 270 < th dose independent rect. 1 16
144 474.98 precipitation 0.1 270 < th dose dependent rect. 1 16
149 476.05 atmosphere 1015.0 270 < th dose independent rect. 6 16
154 476.13 temperature 10.0 270 > th dose independent rect. 1 16
155 476.13 atmosphere 1015.0 270 < th dose independent rect. 1 16
164 477.87 wind 9.0 270 < th dose independent rect. 17 8
166 478.18 temperature 10.0 270 > th dose independent rect. 11 7
167 478.18 atmosphere 1015.0 270 < th dose independent rect. 11 7
169 478.45 humidity 50.0 270 > th dose independent rect. 17 8
171 478.67 humidity 50.0 270 > th dose independent rect. 18 17
172 478.80 wind 9.0 270 < th dose independent rect. 18 17
177 479.82 precipitation 0.1 270 < th dose independent rect. 18 17
178 479.82 precipitation 0.1 270 < th dose dependent rect. 18 17
181 480.65 wind 9.0 270 < th dose independent rect. 1 16
184 480.86 wind 9.0 270 < th dose independent rect. 11 7
190 482.79 atmosphere 995.0 270 > th dose independent rect. 18 17
193 483.43 precipitation 0.1 270 < th dose independent rect. 17 8
194 483.43 precipitation 0.1 270 < th dose dependent rect. 17 8
212 486.59 wind 1.0 270 > th dose independent rect. 17 8
235 489.92 atmosphere 995.0 270 > th dose independent rect. 17 8
257 493.16 wind 1.0 270 > th dose independent rect. 11 7
259 493.35 precipitation 0.1 270 < th dose independent rect. 5 7
260 493.35 precipitation 0.1 270 < th dose dependent rect. 5 7
262 493.58 temperature 10.0 270 > th dose independent rect. 5 7
263 493.58 atmosphere 995.0 270 > th dose independent rect. 5 7
264 493.58 atmosphere 1015.0 270 < th dose independent rect. 5 7
265 493.58 temperature 10.0 270 > th dose independent rect. 12 17
266 493.61 wind 9.0 270 < th dose independent rect. 5 7
270 494.11 precipitation 0.1 270 < th dose independent rect. 12 17
271 494.11 precipitation 0.1 270 < th dose dependent rect. 12 17
287 496.04 atmosphere 995.0 270 > th dose independent rect. 1 16
303 497.06 wind 9.0 270 < th dose independent rect. 12 17
333 499.16 humidity 50.0 270 > th dose independent rect. 6 6
343 500.46 atmosphere 1015.0 270 < th dose dependent rect. 18 7
363 503.11 atmosphere 995.0 270 > th dose independent rect. 11 7
387 505.06 radiation 40.0 270 < th dose dependent rect. 22 9
403 506.03 radiation 1.0 90 < th dose dependent sin 15 NA
404 506.11 wind 7.0 270 < th dose independent rect. 22 8
419 507.20 radiation 1.0 270 > th dose independent rect. 18 18
460 509.69 temperature 10.0 270 > th dose independent rect. 22 8
461 509.69 temperature 30.0 270 < th dose independent rect. 22 8
462 509.69 humidity 50.0 270 > th dose independent rect. 22 8
465 509.69 atmosphere 995.0 270 > th dose independent rect. 22 8
466 509.69 radiation 20.0 270 < th dose independent rect. 22 8
483 510.83 radiation 1.0 270 > th dose independent rect. 6 6
497 511.20 radiation 1.0 270 > th dose independent rect. 11 7
502 511.65 radiation 1.0 270 > th dose independent rect. 4 8
521 512.97 atmosphere 995.0 270 > th dose independent rect. 12 18
522 513.08 wind 9.0 270 < th dose independent rect. 6 16
532 513.39 radiation 1.0 270 > th dose independent rect. 11 19
561 514.74 precipitation 0.1 270 < th dose independent rect. 22 8
562 514.74 precipitation 0.1 270 < th dose dependent rect. 22 8
571 515.16 wind 1.0 90 > th dose independent rect. 13 6
572 515.20 radiation 1.0 270 > th dose independent rect. 12 5
589 515.83 atmosphere 1015.0 270 < th dose independent rect. 6 19
617 518.02 wind 1.0 270 > th dose independent rect. 7 15
621 518.55 wind 1.0 270 > th dose independent rect. 5 7
624 518.67 radiation 1.0 90 > th dose independent rect. 13 17
661 520.82 radiation 1.0 90 < th dose independent sin 15 NA
665 521.17 atmosphere 1015.0 10 < th dose independent rect. 19 19
685 522.30 temperature 10.0 270 > th dose dependent rect. 11 7
692 523.24 temperature 10.0 90 > th dose dependent rect. 13 6
704 523.65 radiation 1.0 90 > th dose independent sin 15 NA
724 524.90 humidity 50.0 270 > th dose dependent rect. 22 8
733 525.47 precipitation 0.1 270 < th dose independent rect. 6 16
734 525.47 precipitation 0.1 270 < th dose dependent rect. 6 16
745 526.50 temperature 30.0 270 < th dose independent rect. 18 17
749 526.76 temperature 30.0 90 < th dose independent rect. 19 8
750 526.76 humidity 50.0 90 > th dose independent rect. 19 8
752 526.76 atmosphere 995.0 90 > th dose independent rect. 19 8
753 526.76 radiation 1.0 90 < th dose independent rect. 19 8
776 527.75 wind 9.0 90 < th dose independent rect. 19 8
785 528.16 humidity 90.0 270 < th dose independent rect. 11 7
817 529.26 radiation 1.0 270 > th dose independent rect. 13 3
841 530.81 humidity 90.0 270 < th dose independent rect. 12 5
860 531.31 atmosphere 1010.0 10 < th dose independent rect. 19 8
906 532.61 radiation 1.0 10 < th dose dependent sin 13 NA
953 534.61 wind 1.0 90 > th dose independent rect. 19 18
970 535.28 temperature 30.0 270 < th dose independent rect. 17 8
972 535.34 radiation 40.0 90 < th dose independent rect. 13 6