BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0532800 Os02g0532800|Os02g0532800
         (195 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G52740.1  | chr3:19546446-19546868 REVERSE LENGTH=141           70   5e-13
AT3G44450.1  | chr3:16074228-16074578 REVERSE LENGTH=117           59   1e-09

>AT3G52740.1 | chr3:19546446-19546868 REVERSE LENGTH=141
          Length = 140

 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 40/53 (75%), Gaps = 1/53 (1%)

Query: 119 LKRHRTEMAGRVRIPEMWGQERLLKDWVDCAVFDRPLAATRGLLTARDALVAE 171
           LK+HR E+AGRV IPE+WGQE LLKDW+DC+ FD  L    G+ +AR ALV E
Sbjct: 70  LKKHRREIAGRVWIPEIWGQEELLKDWIDCSTFDTCLVPA-GISSARTALVEE 121



>AT3G44450.1 | chr3:16074228-16074578 REVERSE LENGTH=117
          Length = 116

 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 3/76 (3%)

Query: 119 LKRHRTEMAGRVRIPEMWGQERLLKDWVDCAVFDRPLAATRGLLTARDALVAECAAPARR 178
           LKRHR E+AG+V IP+ WG+E LL  W+D + FD    +++ +++AR AL+A+    A  
Sbjct: 44  LKRHREEVAGKVPIPDSWGKEGLLMGWMDFSTFDAAFTSSQ-IVSARAALMADSGDDA-- 100

Query: 179 PPHGPTARPLRVQNGC 194
              G   + LRV++ C
Sbjct: 101 GARGSRPQRLRVESSC 116



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.131    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,089,245
Number of extensions: 85626
Number of successful extensions: 110
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 2
Length of query: 195
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 102
Effective length of database: 8,556,881
Effective search space: 872801862
Effective search space used: 872801862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 109 (46.6 bits)