Os04g0412100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0412100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 182.28 | 0.634 | 12 | -0.0128 | 3.66 | 2.26 | -0.264 | 1.6 | -0.282 | 11.5 | 22.91 | 206 | -- | -- |
| 185.19 | 0.634 | 11.9 | 0.143 | 3.66 | 2.03 | -0.494 | -- | -0.227 | 11.5 | 22.96 | 210 | -- | -- |
| 182.54 | 0.629 | 12 | -0.0358 | 3.66 | 2.29 | -- | 1.73 | -0.281 | 11.5 | 22.9 | 210 | -- | -- |
| 186.15 | 0.635 | 11.9 | 0.15 | 3.64 | 2 | -- | -- | -0.238 | 11.5 | 23 | 210 | -- | -- |
| 849.24 | 1.36 | 12.2 | -0.469 | -- | 2.31 | -- | 1.74 | -0.628 | -- | 26.69 | 820 | -- | -- |
| 230.11 | 0.711 | 12 | -0.296 | 3.5 | -- | -0.447 | -- | -0.521 | 11.3 | -- | -- | -- | -- |
| 230.96 | 0.712 | 12 | -0.314 | 3.5 | -- | -- | -- | -0.523 | 11.3 | -- | -- | -- | -- |
| 797.42 | 1.32 | 11.9 | 0.596 | -- | 3.47 | -- | -- | 0.171 | -- | 28.7 | 832 | -- | -- |
| 186.53 | 0.636 | 11.9 | -- | 3.63 | 1.9 | -- | -- | -0.277 | 11.4 | 23 | 210 | -- | -- |
| 997.79 | 1.48 | 12.1 | -0.402 | -- | -- | -- | -- | -0.556 | -- | -- | -- | -- | -- |
| 233.56 | 0.715 | 12 | -- | 3.5 | -- | -- | -- | -0.488 | 11.3 | -- | -- | -- | -- |
| 805.71 | 1.32 | 11.9 | -- | -- | 3.24 | -- | -- | 0.0695 | -- | 28.7 | 828 | -- | -- |
| 1002.04 | 1.48 | 12.1 | -- | -- | -- | -- | -- | -0.511 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 174.36 | wind | 3 | 14400 | < th | dose dependent | rect. | 18 | 12 |
| 4 | 174.60 | wind | 3 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 6 | 174.67 | temperature | 20 | 90 | > th | dose independent | sin | 11 | NA |
| 13 | 175.21 | temperature | 20 | 30 | > th | dose independent | rect. | 16 | 13 |
| 19 | 175.70 | wind | 3 | 14400 | < th | dose dependent | sin | 11 | NA |
| 24 | 176.05 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 34 | 176.33 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 8 |
| 36 | 176.34 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 42 | 176.50 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 52 | 176.84 | temperature | 20 | 90 | < th | dose independent | sin | 12 | NA |
| 64 | 177.28 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 66 | 177.31 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 10 |
| 81 | 177.58 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 82 | 177.58 | wind | 1 | 43200 | < th | dose dependent | rect. | 5 | 8 |
| 91 | 177.72 | wind | 3 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 113 | 178.08 | wind | 3 | 14400 | < th | dose dependent | rect. | 19 | 19 |
| 161 | 178.74 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 7 |
| 186 | 179.03 | wind | 1 | 14400 | > th | dose independent | sin | 11 | NA |
| 199 | 179.15 | wind | 1 | 14400 | < th | dose independent | sin | 11 | NA |
| 202 | 179.17 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 9 |
| 210 | 179.25 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 10 |
| 225 | 179.38 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 14 |
| 226 | 179.38 | humidity | 60 | 14400 | > th | dose dependent | rect. | 3 | 4 |
| 257 | 179.59 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 10 |
| 284 | 179.74 | humidity | 50 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 310 | 179.87 | temperature | 20 | 90 | > th | dose independent | rect. | 6 | 23 |
| 319 | 179.92 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 12 |
| 354 | 180.11 | wind | 1 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 355 | 180.11 | wind | 1 | 14400 | > th | dose independent | rect. | 19 | 19 |
| 371 | 180.17 | wind | 1 | 43200 | > th | dose independent | rect. | 21 | 16 |
| 384 | 180.23 | wind | 1 | 43200 | < th | dose independent | rect. | 21 | 16 |
| 403 | 180.33 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 12 |
| 457 | 180.56 | wind | 3 | 14400 | < th | dose dependent | rect. | 3 | 5 |
| 458 | 180.56 | wind | 1 | 14400 | > th | dose dependent | rect. | 18 | 13 |
| 513 | 180.78 | wind | 1 | 14400 | < th | dose independent | rect. | 19 | 19 |
| 514 | 180.78 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 20 |
| 534 | 180.83 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 14 |
| 569 | 180.94 | temperature | 20 | 90 | < th | dose independent | rect. | 11 | 20 |
| 658 | 181.26 | wind | 1 | 14400 | > th | dose independent | rect. | 9 | 22 |
| 689 | 181.34 | wind | 1 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 693 | 181.36 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 16 |
| 706 | 181.40 | temperature | 20 | 90 | < th | dose independent | rect. | 11 | 22 |
| 749 | 181.52 | wind | 1 | 14400 | < th | dose independent | rect. | 9 | 22 |
| 759 | 181.57 | wind | 1 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 838 | 181.76 | wind | 1 | 14400 | > th | dose dependent | sin | 11 | NA |
| 843 | 181.78 | wind | 1 | 14400 | > th | dose independent | rect. | 11 | 20 |
| 869 | 181.87 | wind | 3 | 14400 | < th | dose dependent | no | NA | NA |
| 896 | 181.95 | wind | 1 | 14400 | < th | dose independent | rect. | 11 | 20 |
| 937 | 182.07 | wind | 1 | 14400 | > th | dose independent | rect. | 11 | 23 |