BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0408900 Os04g0408900|AK058627
         (76 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0408900  Similar to DNA-binding protein S1FA                  72   6e-14
Os04g0408700  Similar to DNA-binding protein S1FA1                 63   4e-11

>Os04g0408900 Similar to DNA-binding protein S1FA
          Length = 76

 Score = 72.4 bits (176), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 40/76 (52%), Positives = 40/76 (52%)

Query: 1  MADQSNNMIIEEVNKGLNPGXXXXXXXXXXXXXXXXGNYALYMYAQKTXXXXXXXXXXXX 60
          MADQSNNMIIEEVNKGLNPG                GNYALYMYAQKT            
Sbjct: 1  MADQSNNMIIEEVNKGLNPGTIVLLVVATLLILFFVGNYALYMYAQKTLPPRKKKPVSKK 60

Query: 61 XXXXXXXXQGVSAPGE 76
                  QGVSAPGE
Sbjct: 61 KLKREKLKQGVSAPGE 76



>Os04g0408700 Similar to DNA-binding protein S1FA1
          Length = 80

 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 38/76 (50%)

Query: 1  MADQSNNMIIEEVNKGLNPGXXXXXXXXXXXXXXXXGNYALYMYAQKTXXXXXXXXXXXX 60
           AD +NN++IEEVNKGLNPG                GNYALY+YAQKT            
Sbjct: 5  FADSANNVVIEEVNKGLNPGMIVLIVVATFLLLFFVGNYALYVYAQKTLPPRKKKPVSKK 64

Query: 61 XXXXXXXXQGVSAPGE 76
                  QGVSAPGE
Sbjct: 65 KMKREKLKQGVSAPGE 80



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.307    0.127    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,110,151
Number of extensions: 14659
Number of successful extensions: 13
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 2
Length of query: 76
Length of database: 17,035,801
Length adjustment: 47
Effective length of query: 29
Effective length of database: 14,581,743
Effective search space: 422870547
Effective search space used: 422870547
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 149 (62.0 bits)