Os04g0408700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to DNA-binding protein S1FA1.
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Os04g0408700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to DNA-binding protein S1FA1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.94 | 0.248 | 11.7 | -0.606 | 0.56 | 0.937 | -0.167 | -1.35 | 0.0386 | 15.3 | 19.71 | 636 | -- | -- |
| 29.1 | 0.251 | 11.6 | -0.407 | 0.612 | 0.925 | -0.303 | -- | 0.0959 | 15.3 | 17.57 | 706 | -- | -- |
| 27.98 | 0.246 | 11.7 | -0.624 | 0.523 | 0.955 | -- | -1.45 | 0.0324 | 15.3 | 19.78 | 587 | -- | -- |
| 28.87 | 0.25 | 11.6 | -0.352 | 0.614 | 0.99 | -- | -- | 0.113 | 15.4 | 16.3 | 693 | -- | -- |
| 35.7 | 0.278 | 11.7 | -0.702 | -- | 1.26 | -- | -1.76 | -0.0425 | -- | 21 | 356 | -- | -- |
| 42.82 | 0.307 | 11.6 | -0.0911 | 0.736 | -- | -0.289 | -- | 0.277 | 16.8 | -- | -- | -- | -- |
| 43.04 | 0.307 | 11.6 | -0.0923 | 0.734 | -- | -- | -- | 0.275 | 16.7 | -- | -- | -- | -- |
| 38.55 | 0.289 | 11.6 | -0.37 | -- | 1.14 | -- | -- | 0.0678 | -- | 20.2 | 334 | -- | -- |
| 31.75 | 0.262 | 11.6 | -- | 0.608 | 0.834 | -- | -- | 0.17 | 15.6 | 16.7 | 652 | -- | -- |
| 71.6 | 0.395 | 11.6 | -0.12 | -- | -- | -- | -- | 0.256 | -- | -- | -- | -- | -- |
| 43.26 | 0.308 | 11.6 | -- | 0.736 | -- | -- | -- | 0.286 | 16.7 | -- | -- | -- | -- |
| 41.88 | 0.301 | 11.6 | -- | -- | 1.05 | -- | -- | 0.121 | -- | 20.7 | 335 | -- | -- |
| 71.98 | 0.396 | 11.6 | -- | -- | -- | -- | -- | 0.269 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.90 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 5 | 27.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 9 | 27.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 13 | 27.22 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 20 |
| 34 | 27.54 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 62 | 27.77 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 63 | 27.77 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 66 | 27.80 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 20 |
| 116 | 28.11 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 15 |
| 134 | 28.20 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 148 | 28.23 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 211 | 28.45 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 221 | 28.49 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 277 | 28.68 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 21 |
| 363 | 28.98 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 5 |
| 423 | 29.17 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 11 |
| 442 | 29.22 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 450 | 29.23 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 451 | 29.23 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 455 | 29.24 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 474 | 29.25 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 646 | 29.59 | temperature | 30 | 1440 | < th | dose dependent | rect. | 14 | 16 |
| 738 | 29.70 | temperature | 30 | 1440 | < th | dose dependent | sin | 15 | NA |
| 831 | 29.78 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 835 | 29.78 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 839 | 29.79 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 884 | 29.84 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 967 | 29.91 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 7 |