BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0408700 Os04g0408700|AK121205
         (80 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G37120.1  | chr2:15594250-15594815 REVERSE LENGTH=77            54   2e-08
AT3G53370.1  | chr3:19788159-19788737 REVERSE LENGTH=77            49   6e-07

>AT2G37120.1 | chr2:15594250-15594815 REVERSE LENGTH=77
          Length = 76

 Score = 53.5 bits (127), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 43/73 (58%), Gaps = 2/73 (2%)

Query: 8  SANNVVIEEVNKGLNPGMIVLIVVATFLLLFFVGNYALYVYAQKTLPPRXXXXXXXXXXX 67
          SA   V+E   KGLNPG+IVL+V+   L+ F + NY +Y+YAQK LPPR           
Sbjct: 6  SAGKAVVEA--KGLNPGLIVLLVIGGLLVTFLIANYVMYMYAQKNLPPRKKKPLSKKKLK 63

Query: 68 XXXLKQGVSAPGE 80
             LKQGV  PGE
Sbjct: 64 REKLKQGVPVPGE 76



>AT3G53370.1 | chr3:19788159-19788737 REVERSE LENGTH=77
          Length = 76

 Score = 48.5 bits (114), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 37/60 (61%)

Query: 21 LNPGMIVLIVVATFLLLFFVGNYALYVYAQKTLPPRXXXXXXXXXXXXXXLKQGVSAPGE 80
          LNPG+IVL+VV   LL+F + NY LYVYAQK LPPR              LKQGV  PGE
Sbjct: 17 LNPGLIVLLVVGGPLLVFLIANYVLYVYAQKNLPPRKKKPVSKKKLKREKLKQGVPVPGE 76



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.140    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,263,580
Number of extensions: 32426
Number of successful extensions: 82
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 3
Length of query: 80
Length of database: 11,106,569
Length adjustment: 52
Effective length of query: 28
Effective length of database: 9,680,937
Effective search space: 271066236
Effective search space used: 271066236
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)