BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0408700 Os04g0408700|AK121205
         (80 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0408700  Similar to DNA-binding protein S1FA1                114   2e-26
Os04g0408900  Similar to DNA-binding protein S1FA                  92   1e-19

>Os04g0408700 Similar to DNA-binding protein S1FA1
          Length = 80

 Score =  114 bits (285), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/80 (82%), Positives = 66/80 (82%)

Query: 1  MADQFADSANNVVIEEVNKGLNPGMIVLIVVATFLLLFFVGNYALYVYAQKTLPPRXXXX 60
          MADQFADSANNVVIEEVNKGLNPGMIVLIVVATFLLLFFVGNYALYVYAQKTLPPR    
Sbjct: 1  MADQFADSANNVVIEEVNKGLNPGMIVLIVVATFLLLFFVGNYALYVYAQKTLPPRKKKP 60

Query: 61 XXXXXXXXXXLKQGVSAPGE 80
                    LKQGVSAPGE
Sbjct: 61 VSKKKMKREKLKQGVSAPGE 80



>Os04g0408900 Similar to DNA-binding protein S1FA
          Length = 76

 Score = 91.7 bits (226), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/76 (68%), Positives = 58/76 (76%)

Query: 5  FADSANNVVIEEVNKGLNPGMIVLIVVATFLLLFFVGNYALYVYAQKTLPPRXXXXXXXX 64
           AD +NN++IEEVNKGLNPG IVL+VVAT L+LFFVGNYALY+YAQKTLPPR        
Sbjct: 1  MADQSNNMIIEEVNKGLNPGTIVLLVVATLLILFFVGNYALYMYAQKTLPPRKKKPVSKK 60

Query: 65 XXXXXXLKQGVSAPGE 80
                LKQGVSAPGE
Sbjct: 61 KLKREKLKQGVSAPGE 76



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.140    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,969,330
Number of extensions: 47658
Number of successful extensions: 79
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 2
Length of query: 80
Length of database: 17,035,801
Length adjustment: 51
Effective length of query: 29
Effective length of database: 14,372,887
Effective search space: 416813723
Effective search space used: 416813723
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)