Os04g0408900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to DNA-binding protein S1FA.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0408900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to DNA-binding protein S1FA.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.96 | 0.286 | 14.2 | -0.697 | 0.626 | 0.267 | -0.24 | -1.31 | 0.0527 | 1.03 | 19.2 | 895 | -- | -- |
| 39.16 | 0.291 | 14.2 | -0.616 | 0.598 | 0.56 | -0.503 | -- | 0.0768 | 0.919 | 18.39 | 2337 | -- | -- |
| 37.18 | 0.284 | 14.2 | -0.7 | 0.627 | 0.259 | -- | -1.4 | 0.0524 | 1.09 | 19.3 | 895 | -- | -- |
| 40.13 | 0.295 | 14.2 | -0.621 | 0.62 | 0.623 | -- | -- | 0.0593 | 0.94 | 18.4 | 2374 | -- | -- |
| 60.54 | 0.362 | 14.2 | -0.755 | -- | 0.502 | -- | -1.24 | 0.0223 | -- | 19.43 | 908 | -- | -- |
| 44.7 | 0.313 | 14.2 | -0.376 | 0.662 | -- | -0.586 | -- | 0.166 | 0.818 | -- | -- | -- | -- |
| 46.12 | 0.318 | 14.2 | -0.355 | 0.665 | -- | -- | -- | 0.169 | 0.959 | -- | -- | -- | -- |
| 61.16 | 0.364 | 14.2 | -0.639 | -- | 1.04 | -- | -- | 0.038 | -- | 18.32 | 907 | -- | -- |
| 47.56 | 0.321 | 14.2 | -- | 0.636 | 0.384 | -- | -- | 0.176 | 0.905 | 17.7 | 2333 | -- | -- |
| 73.65 | 0.401 | 14.1 | -0.33 | -- | -- | -- | -- | 0.181 | -- | -- | -- | -- | -- |
| 49.44 | 0.329 | 14.1 | -- | 0.659 | -- | -- | -- | 0.208 | 0.936 | -- | -- | -- | -- |
| 69.79 | 0.389 | 14.1 | -- | -- | 0.719 | -- | -- | 0.176 | -- | 18.3 | 963 | -- | -- |
| 76.52 | 0.408 | 14.1 | -- | -- | -- | -- | -- | 0.218 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.16 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 17 | 12 |
| 5 | 35.23 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 19 | 9 |
| 21 | 35.36 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 12 | NA |
| 27 | 35.44 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 19 | 10 |
| 32 | 35.47 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 20 | 8 |
| 77 | 35.67 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 102 | 35.79 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 120 | 35.88 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 129 | 35.90 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 7 |
| 142 | 35.94 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 143 | 35.94 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 5 |
| 200 | 36.09 | humidity | 90.0 | 14400 | > th | dose independent | sin | 11 | NA |
| 203 | 36.09 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 215 | 36.12 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 243 | 36.17 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 262 | 36.23 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 9 |
| 280 | 36.27 | radiation | 10.0 | 90 | < th | dose independent | rect. | 5 | 22 |
| 283 | 36.28 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 301 | 36.29 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 16 | 14 |
| 312 | 36.30 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 17 | 17 |
| 316 | 36.31 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 329 | 36.34 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 9 |
| 332 | 36.35 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 5 |
| 341 | 36.36 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 23 | 23 |
| 342 | 36.37 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 343 | 36.37 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 344 | 36.37 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 16 | 6 |
| 345 | 36.37 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 5 |
| 346 | 36.37 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 19 | 14 |
| 355 | 36.39 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 361 | 36.41 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 364 | 36.41 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 370 | 36.42 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 5 |
| 388 | 36.46 | wind | 1.0 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 413 | 36.50 | temperature | 25.0 | 720 | < th | dose dependent | sin | 9 | NA |
| 414 | 36.50 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 428 | 36.52 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 435 | 36.53 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 15 | 4 |
| 437 | 36.53 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 438 | 36.53 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 15 | 4 |
| 445 | 36.55 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 15 | 4 |
| 449 | 36.55 | temperature | 20.0 | 720 | > th | dose dependent | sin | 6 | NA |
| 451 | 36.55 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 12 | 7 |
| 455 | 36.57 | temperature | 20.0 | 720 | < th | dose independent | rect. | 5 | 2 |
| 521 | 36.66 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 530 | 36.67 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 16 | 8 |
| 541 | 36.68 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 546 | 36.68 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 15 |
| 549 | 36.69 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 557 | 36.69 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 574 | 36.70 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 22 | 15 |
| 594 | 36.72 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 606 | 36.73 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 607 | 36.73 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 649 | 36.78 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 677 | 36.81 | temperature | 20.0 | 720 | > th | dose independent | rect. | 4 | 3 |
| 728 | 36.85 | wind | 1.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 744 | 36.86 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 749 | 36.87 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 752 | 36.87 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 760 | 36.88 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 776 | 36.90 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 792 | 36.91 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 18 | NA |
| 801 | 36.91 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 822 | 36.93 | wind | 7.0 | 43200 | > th | dose independent | rect. | 21 | 17 |
| 847 | 36.96 | temperature | 20.0 | 720 | < th | dose independent | rect. | 3 | 5 |
| 856 | 36.97 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 865 | 36.98 | wind | 7.0 | 43200 | > th | dose independent | rect. | 1 | 13 |
| 880 | 36.99 | wind | 7.0 | 43200 | < th | dose independent | rect. | 21 | 17 |
| 881 | 36.99 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 9 | 2 |
| 892 | 37.00 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 7 | 3 |
| 897 | 37.01 | wind | 1.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 917 | 37.02 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 919 | 37.02 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 921 | 37.02 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 930 | 37.02 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 931 | 37.02 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 2 |
| 937 | 37.03 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 938 | 37.03 | wind | 9.0 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 945 | 37.03 | wind | 7.0 | 43200 | < th | dose independent | rect. | 1 | 13 |
| 950 | 37.03 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 952 | 37.03 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 4 | 5 |
| 988 | 37.05 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 15 |
| 990 | 37.05 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 995 | 37.05 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 5 |