BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0408600 Os04g0408600|AK121434
         (169 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0408600  Protein of unknown function DUF662 family protein   276   6e-75
Os02g0528100  Protein of unknown function DUF662 family protein   182   1e-46

>Os04g0408600 Protein of unknown function DUF662 family protein
          Length = 169

 Score =  276 bits (705), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 145/169 (85%), Positives = 145/169 (85%)

Query: 1   MQGEVDQPMQMVLRVKHPXXXXXXXXXXXXXXXXXXXXXXXXVFKAKEEQIERKKMEVRE 60
           MQGEVDQPMQMVLRVKHP                        VFKAKEEQIERKKMEVRE
Sbjct: 1   MQGEVDQPMQMVLRVKHPSSLGGGGGGGEEEAGEASSRSALSVFKAKEEQIERKKMEVRE 60

Query: 61  KVFAQLGRVEEESKRLAFIRQELEGMADPTRKEVEVIRKRIDVVNRQLKPLGKTCVKKEK 120
           KVFAQLGRVEEESKRLAFIRQELEGMADPTRKEVEVIRKRIDVVNRQLKPLGKTCVKKEK
Sbjct: 61  KVFAQLGRVEEESKRLAFIRQELEGMADPTRKEVEVIRKRIDVVNRQLKPLGKTCVKKEK 120

Query: 121 EYKEILEAYNEKNKEKALLVNRLIELVSESERMRMKKLEELNKTVDSLY 169
           EYKEILEAYNEKNKEKALLVNRLIELVSESERMRMKKLEELNKTVDSLY
Sbjct: 121 EYKEILEAYNEKNKEKALLVNRLIELVSESERMRMKKLEELNKTVDSLY 169



>Os02g0528100 Protein of unknown function DUF662 family protein
          Length = 174

 Score =  182 bits (461), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 92/112 (82%), Positives = 102/112 (91%)

Query: 58  VREKVFAQLGRVEEESKRLAFIRQELEGMADPTRKEVEVIRKRIDVVNRQLKPLGKTCVK 117
           VREKVF+ LGRVEEE+KRLAFIRQELE M+DPTR+EVE IRKRID VNRQLKPLGK C+K
Sbjct: 63  VREKVFSMLGRVEEETKRLAFIRQELEVMSDPTRREVETIRKRIDKVNRQLKPLGKNCLK 122

Query: 118 KEKEYKEILEAYNEKNKEKALLVNRLIELVSESERMRMKKLEELNKTVDSLY 169
           KEKEYK  LEAYNEK+ EKA LVNRL+ELV ESE++RMKKLEELNKTV+SLY
Sbjct: 123 KEKEYKACLEAYNEKSNEKATLVNRLMELVGESEQLRMKKLEELNKTVESLY 174



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.131    0.340 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,908,217
Number of extensions: 133877
Number of successful extensions: 668
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 667
Number of HSP's successfully gapped: 2
Length of query: 169
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 75
Effective length of database: 12,127,685
Effective search space: 909576375
Effective search space used: 909576375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 152 (63.2 bits)