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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0408600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF662 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.34 (0.0822) R2 : 0.54
β1 : -6.69 (0.321) R2dD : 0.529 R2D : 0.367
β2 : 2.4 (0.28) R2dC : 0.127 R2C : -0.0874
β3 : -4.92 (0.51) R2dE : 0.174 R2E : -0.0598
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 8.68 (1.57) R2dD*E : 0.0352 R2D*E : -0.1
γ1 : -1.53 (0.184) R2dN8 : 0.105 R2N8 : -0.0525
σ : 1.53
deviance : 1081.23
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_____
C
peak time of C : 6.1
E
wheather : radiation
threshold : 9.164
memory length : 1238
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 12.2
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1085.32 1.55 6.36 -6.77 2.05 -4.56 0.523 8.02 -1.56 5.86 8.921 1259 12.8 --
1126.27 1.56 6.33 -6.16 2.31 -4.47 3.18 -- -1.37 6.23 7.78 1233 12.2 --
1081.23 1.53 6.34 -6.69 2.4 -4.92 -- 8.68 -1.53 6.1 9.164 1238 12.2 --
1150.3 1.58 6.33 -6.15 2.37 -4.54 -- -- -1.38 6.25 7.849 1231 12 --
1195.29 1.61 6.37 -6.71 -- -3.48 -- 8.87 -1.51 -- 9.892 1395 11.8 --
1307.05 1.69 6.27 -6.12 0.761 -- 2.82 -- -0.96 4.83 -- -- -- --
1325.59 1.7 6.28 -6.13 0.791 -- -- -- -0.975 3.93 -- -- -- --
1213.55 1.62 6.39 -6.02 -- -2.5 -- -- -1.41 -- 13.68 1432 8.72 --
2007.23 2.09 6.27 -- 2.49 -5.22 -- -- -1.06 5.91 10 2611 12 --
1359.83 1.72 6.29 -6.1 -- -- -- -- -0.954 -- -- -- -- --
2317.31 2.25 6.13 -- 0.672 -- -- -- -0.292 4.05 -- -- -- --
2041.69 2.1 6.21 -- -- -3.17 -- -- -0.798 -- 10.01 2877 10.2 --
2341.9 2.26 6.13 -- -- -- -- -- -0.277 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1122.97 wind 3 4320 > th dose independent rect. 8 1
2 1125.66 wind 3 4320 < th dose independent rect. 8 1
3 1126.88 radiation 10 1440 < th dose dependent rect. 11 7
5 1128.20 radiation 10 1440 < th dose dependent rect. 11 16
7 1128.30 radiation 10 1440 > th dose independent rect. 11 20
8 1128.30 radiation 10 1440 < th dose dependent rect. 11 14
11 1128.47 radiation 10 1440 < th dose dependent rect. 11 11
17 1130.89 radiation 10 1440 > th dose independent rect. 11 7
53 1134.21 wind 3 4320 > th dose independent rect. 5 4
56 1136.07 radiation 10 1440 > th dose independent rect. 11 2
60 1137.23 radiation 10 1440 < th dose dependent sin 18 NA
61 1137.37 wind 3 4320 < th dose independent rect. 5 4
84 1142.43 radiation 10 1440 > th dose independent sin 16 NA
137 1147.13 humidity 80 1440 < th dose dependent rect. 15 6
224 1153.84 humidity 70 1440 < th dose independent sin 13 NA
225 1153.88 humidity 80 1440 < th dose dependent rect. 15 17
228 1154.04 humidity 70 720 < th dose independent rect. 18 2
247 1154.55 humidity 70 720 > th dose independent rect. 18 9
258 1155.19 radiation 10 1440 < th dose dependent rect. 11 2
260 1155.22 radiation 10 1440 < th dose independent rect. 15 1
265 1155.58 humidity 70 1440 < th dose independent rect. 15 16
266 1155.61 humidity 80 1440 < th dose dependent sin 15 NA
273 1155.86 humidity 70 1440 < th dose independent rect. 15 5
319 1157.09 radiation 10 1440 > th dose independent rect. 8 23
330 1157.38 humidity 70 1440 > th dose independent sin 13 NA
357 1158.39 radiation 10 1440 > th dose independent rect. 8 10
400 1159.22 radiation 20 1440 > th dose independent rect. 16 15
404 1159.35 radiation 10 1440 > th dose independent rect. 14 16
408 1159.46 radiation 10 1440 > th dose independent rect. 14 4
468 1160.12 humidity 70 1440 > th dose independent rect. 15 16
473 1160.22 humidity 70 1440 > th dose independent rect. 15 12
477 1160.27 humidity 70 1440 > th dose independent rect. 15 10
482 1160.32 humidity 70 1440 > th dose independent rect. 15 5
498 1160.55 wind 5 4320 < th dose dependent rect. 6 3
501 1160.62 radiation 20 1440 > th dose dependent rect. 16 15
508 1160.69 wind 5 4320 < th dose dependent rect. 8 1
521 1161.19 humidity 70 1440 > th dose independent rect. 18 13
543 1161.55 radiation 20 1440 > th dose independent rect. 16 1
573 1161.69 humidity 70 1440 > th dose independent rect. 18 2
580 1161.78 radiation 20 1440 > th dose dependent rect. 16 1
601 1162.08 radiation 10 1440 > th dose independent rect. 15 23
607 1162.39 temperature 30 720 > th dose dependent rect. 18 1
638 1163.16 radiation 10 1440 > th dose independent no NA NA
639 1163.16 radiation 10 1440 > th dose independent rect. 5 13
755 1164.24 wind 1 4320 > th dose dependent rect. 6 3
775 1164.66 wind 1 14400 < th dose independent rect. 1 1
882 1166.35 temperature 25 720 > th dose dependent rect. 21 2
889 1166.57 wind 1 4320 > th dose dependent rect. 8 1
891 1166.61 radiation 1 1440 > th dose dependent rect. 16 1
897 1166.99 radiation 40 1440 < th dose dependent rect. 16 1
914 1167.38 humidity 50 1440 > th dose dependent rect. 12 9
915 1167.39 humidity 50 1440 > th dose dependent rect. 11 22
949 1168.04 humidity 50 1440 > th dose dependent rect. 12 11
959 1168.37 radiation 20 1440 < th dose independent rect. 16 11
970 1168.64 radiation 20 1440 < th dose independent rect. 16 4