BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0408600 Os04g0408600|AK121434
(169 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G27740.1 | chr2:11822800-11823575 FORWARD LENGTH=175 161 2e-40
AT3G09980.1 | chr3:3069358-3071145 FORWARD LENGTH=179 160 2e-40
AT3G52920.1 | chr3:19624601-19625981 FORWARD LENGTH=181 159 1e-39
AT2G36410.1 | chr2:15279041-15280270 FORWARD LENGTH=196 157 2e-39
AT3G52900.1 | chr3:19613134-19613852 FORWARD LENGTH=165 144 2e-35
AT5G03660.1 | chr5:938068-939811 FORWARD LENGTH=174 141 2e-34
AT2G36355.1 | chr2:15242449-15243276 FORWARD LENGTH=156 136 6e-33
>AT2G27740.1 | chr2:11822800-11823575 FORWARD LENGTH=175
Length = 174
Score = 161 bits (407), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/124 (61%), Positives = 108/124 (87%)
Query: 43 VFKAKEEQIERKKMEVREKVFAQLGRVEEESKRLAFIRQELEGMADPTRKEVEVIRKRID 102
+FKAKE++IER+KMEV+++V +LG EE ++RLA IR+ELE + DP RKE+ IRKR+D
Sbjct: 47 LFKAKEDEIERRKMEVKDRVQKKLGLAEEATRRLAEIREELEALTDPMRKEISAIRKRVD 106
Query: 103 VVNRQLKPLGKTCVKKEKEYKEILEAYNEKNKEKALLVNRLIELVSESERMRMKKLEELN 162
+NR+LKPLG++C +KE+E+KE LEAYNEKNKEKA+ V++L+ELV+ESE++RM KLEEL+
Sbjct: 107 AINRELKPLGQSCQRKEREFKEALEAYNEKNKEKAIFVSKLVELVTESEKLRMTKLEELS 166
Query: 163 KTVD 166
K+++
Sbjct: 167 KSIE 170
>AT3G09980.1 | chr3:3069358-3071145 FORWARD LENGTH=179
Length = 178
Score = 160 bits (406), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/127 (70%), Positives = 112/127 (88%)
Query: 43 VFKAKEEQIERKKMEVREKVFAQLGRVEEESKRLAFIRQELEGMADPTRKEVEVIRKRID 102
F+AKEE+IE+KKME+RE+V AQLGRVEEE+KRLA IR+ELEG+ADP RKEV ++RK+ID
Sbjct: 52 AFRAKEEEIEKKKMEIRERVQAQLGRVEEETKRLALIREELEGLADPMRKEVAMVRKKID 111
Query: 103 VVNRQLKPLGKTCVKKEKEYKEILEAYNEKNKEKALLVNRLIELVSESERMRMKKLEELN 162
VN++LKPLG T KKE+EYKE LEA+NEKN+EK L+ RL+ELV ESE+MRMKKLEEL+
Sbjct: 112 SVNKELKPLGHTVQKKEREYKEALEAFNEKNREKVQLITRLMELVGESEKMRMKKLEELS 171
Query: 163 KTVDSLY 169
K +DS++
Sbjct: 172 KNIDSIH 178
>AT3G52920.1 | chr3:19624601-19625981 FORWARD LENGTH=181
Length = 180
Score = 159 bits (401), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 79/128 (61%), Positives = 108/128 (84%), Gaps = 3/128 (2%)
Query: 43 VFKAKEEQIERKKMEVREKVFAQLGRVEEESKRLAFIRQELEGMADPTRKEVEVIRKRID 102
F+AKE++IE++KMEVRE+V AQLGRVEEE++RLA IR+ELE MADP RKEV +RK+ID
Sbjct: 38 AFRAKEDEIEKRKMEVRERVKAQLGRVEEETRRLASIREELETMADPMRKEVNWVRKKID 97
Query: 103 VVNRQLKPLGKTCVKKEKEYKEILEAYNEKNKEKALLVNRLIE---LVSESERMRMKKLE 159
VN++LKPLG T KKE+EYKE L+ +NEKN+EK L+ +L+E LV ESE++R+KKL+
Sbjct: 98 SVNKELKPLGSTVQKKEREYKEALDTFNEKNREKVQLITKLMEMGQLVGESEKLRLKKLD 157
Query: 160 ELNKTVDS 167
EL++++D+
Sbjct: 158 ELSRSIDT 165
>AT2G36410.1 | chr2:15279041-15280270 FORWARD LENGTH=196
Length = 195
Score = 157 bits (398), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 78/129 (60%), Positives = 109/129 (84%), Gaps = 3/129 (2%)
Query: 43 VFKAKEEQIERKKMEVREKVFAQLGRVEEESKRLAFIRQELEGMADPTRKEVEVIRKRID 102
F+AKE++IE+++MEVRE++ AQLGRVE+E+KRL+ IR+ELE MADP RKEV V+RK+ID
Sbjct: 67 AFRAKEDEIEKRRMEVRERIQAQLGRVEQETKRLSTIREELESMADPMRKEVSVVRKKID 126
Query: 103 VVNRQLKPLGKTCVKKEKEYKEILEAYNEKNKEKALLVNRLIE---LVSESERMRMKKLE 159
VN++LKPLG T KKE+EYKE L+ +NEKN+EK L+ +L+E LV ESE++RM KLE
Sbjct: 127 SVNKELKPLGSTVQKKEREYKEALDTFNEKNREKVQLITKLMEMEQLVGESEKLRMIKLE 186
Query: 160 ELNKTVDSL 168
EL+K+++++
Sbjct: 187 ELSKSIETV 195
>AT3G52900.1 | chr3:19613134-19613852 FORWARD LENGTH=165
Length = 164
Score = 144 bits (364), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/125 (60%), Positives = 101/125 (80%)
Query: 44 FKAKEEQIERKKMEVREKVFAQLGRVEEESKRLAFIRQELEGMADPTRKEVEVIRKRIDV 103
F+A+EE+IERKKM V+EKV +LG EE ++ L +ELE M DP RKEV ++RK+ID+
Sbjct: 39 FQAREEEIERKKMTVKEKVQQRLGFAEEATRCLTQTLEELEIMGDPMRKEVGMVRKKIDM 98
Query: 104 VNRQLKPLGKTCVKKEKEYKEILEAYNEKNKEKALLVNRLIELVSESERMRMKKLEELNK 163
NR +K L ++C KKEKEYK+ LEA+NEKNKEKA LV+ L+EL++ESER+R+KKLEE+NK
Sbjct: 99 ANRDIKSLAQSCQKKEKEYKDTLEAFNEKNKEKAHLVSMLMELLAESERLRIKKLEEINK 158
Query: 164 TVDSL 168
TV +L
Sbjct: 159 TVGTL 163
>AT5G03660.1 | chr5:938068-939811 FORWARD LENGTH=174
Length = 173
Score = 141 bits (355), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/109 (65%), Positives = 89/109 (81%)
Query: 58 VREKVFAQLGRVEEESKRLAFIRQELEGMADPTRKEVEVIRKRIDVVNRQLKPLGKTCVK 117
+RE+V AQLGRVE+ESKRLA IR+ELEG ADP RKEV ++RK+ID ++++LKPLG T K
Sbjct: 61 IRERVQAQLGRVEDESKRLAMIREELEGFADPMRKEVTMVRKKIDSLDKELKPLGNTVQK 120
Query: 118 KEKEYKEILEAYNEKNKEKALLVNRLIELVSESERMRMKKLEELNKTVD 166
KE EYK+ LEA+NEKNKEK L+ +L EL ESE+ R KKLEEL+K +D
Sbjct: 121 KETEYKDALEAFNEKNKEKVELITKLQELEGESEKFRFKKLEELSKNID 169
>AT2G36355.1 | chr2:15242449-15243276 FORWARD LENGTH=156
Length = 155
Score = 136 bits (342), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 71/125 (56%), Positives = 101/125 (80%)
Query: 44 FKAKEEQIERKKMEVREKVFAQLGRVEEESKRLAFIRQELEGMADPTRKEVEVIRKRIDV 103
F+A+EE+IERKKM V++K+ +LG EE ++ L + LE M DP RKEV ++RK+I++
Sbjct: 30 FQAREEEIERKKMAVKDKIQQRLGFAEEATRSLTQTLEGLEIMGDPMRKEVGMVRKKIEM 89
Query: 104 VNRQLKPLGKTCVKKEKEYKEILEAYNEKNKEKALLVNRLIELVSESERMRMKKLEELNK 163
NR++K L ++C KKE+EYKEI EA++EKNKEKA LV+ L+EL++ESER+R+KKLEE+NK
Sbjct: 90 ANREIKSLSQSCQKKEREYKEIHEAFDEKNKEKAHLVSILMELLAESERVRVKKLEEINK 149
Query: 164 TVDSL 168
T+ SL
Sbjct: 150 TIGSL 154
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.131 0.340
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,810,999
Number of extensions: 107029
Number of successful extensions: 866
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 876
Number of HSP's successfully gapped: 7
Length of query: 169
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 78
Effective length of database: 8,611,713
Effective search space: 671713614
Effective search space used: 671713614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 108 (46.2 bits)