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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0528100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF662 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.02 (0.0306) R2 : 0.00156
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0543 (0.0644) R2dN8 : 0.00201 R2N8 : 0.00156
σ : 0.576
deviance : 152.5
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
143.98 0.564 3.07 0.0884 0.152 2.14 -0.271 3.56 0.00482 3.27 18.5 3573 -- --
150.32 0.575 3.02 -0.115 0.127 0.34 -0.256 -- -0.0643 3.62 18.5 3573 -- --
144.19 0.559 3.08 0.0924 0.156 2.33 -- 4 0.00824 3.29 18.31 3570 -- --
146.42 0.564 3 0.106 0.156 0.694 -- -- 0.023 3.59 19.9 2733 -- --
145.45 0.562 3.08 0.0954 -- 2.35 -- 4.04 0.0037 -- 18.21 3533 -- --
150.78 0.576 3.02 -0.153 0.131 -- -0.273 -- -0.0752 3.47 -- -- -- --
151.01 0.575 3.02 -0.148 0.13 -- -- -- -0.0736 3.6 -- -- -- --
147.74 0.566 3 0.105 -- 0.682 -- -- 0.0221 -- 19.79 2872 -- --
146.63 0.564 3.01 -- 0.156 0.631 -- -- 0.00214 3.59 19.77 2731 -- --
151.96 0.576 3.02 -0.143 -- -- -- -- -0.0702 -- -- -- -- --
151.59 0.576 3.02 -- 0.127 -- -- -- -0.0571 3.61 -- -- -- --
147.94 0.566 3.01 -- -- 0.611 -- -- 0.00194 -- 19.65 2868 -- --
152.5 0.576 3.02 -- -- -- -- -- -0.0543 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 136.37 humidity 60.0 90 < th dose dependent rect. 9 1
16 136.71 humidity 60.0 90 < th dose independent rect. 9 1
31 140.33 wind 3.0 30 < th dose dependent rect. 2 1
32 140.35 temperature 20.0 30 > th dose dependent rect. 2 1
33 140.40 atmosphere 1005.0 30 > th dose dependent rect. 2 1
37 140.50 atmosphere 1005.0 30 > th dose independent rect. 2 1
38 140.51 wind 3.0 30 < th dose independent rect. 2 1
41 140.54 humidity 80.0 30 > th dose dependent rect. 2 1
44 140.59 humidity 80.0 30 > th dose independent rect. 2 1
53 140.68 temperature 10.0 30 > th dose independent rect. 2 1
55 140.68 temperature 30.0 30 < th dose independent rect. 2 1
56 140.68 humidity 50.0 30 > th dose independent rect. 2 1
59 140.68 atmosphere 995.0 30 > th dose independent rect. 2 1
60 140.68 atmosphere 1010.0 30 < th dose independent rect. 2 1
62 140.68 radiation 1.0 30 < th dose independent rect. 2 1
67 140.68 precipitation 0.1 30 < th dose independent rect. 2 1
68 140.68 temperature 10.0 30 > th dose independent rect. 3 23
69 140.68 radiation 1.0 30 < th dose dependent rect. 2 1
74 140.68 precipitation 0.1 30 < th dose dependent rect. 2 1
81 141.04 atmosphere 1015.0 30 < th dose dependent rect. 2 1
83 141.19 temperature 30.0 30 < th dose dependent rect. 2 1
94 141.64 wind 1.0 30 > th dose independent rect. 2 1
95 141.68 radiation 1.0 43200 < th dose dependent rect. 3 1
130 142.23 humidity 90.0 1440 < th dose independent rect. 15 1
132 142.26 temperature 25.0 1440 < th dose dependent rect. 14 1
141 142.54 wind 9.0 1440 < th dose independent rect. 3 1
142 142.54 temperature 10.0 1440 > th dose independent rect. 3 1
145 142.54 temperature 30.0 1440 < th dose independent rect. 3 1
149 142.54 humidity 50.0 1440 > th dose independent rect. 3 1
158 142.54 atmosphere 995.0 1440 > th dose independent rect. 3 1
159 142.54 radiation 1.0 1440 < th dose independent rect. 3 1
179 142.54 temperature 10.0 1440 > th dose independent rect. 4 23
182 142.54 radiation 1.0 1440 < th dose dependent rect. 3 1
197 142.62 atmosphere 995.0 30 > th dose independent rect. 3 23
208 143.08 radiation 10.0 1440 < th dose dependent rect. 14 1
229 143.35 radiation 10.0 1440 < th dose independent rect. 11 4
232 143.41 radiation 10.0 1440 < th dose dependent rect. 11 1
235 143.44 wind 9.0 30 < th dose independent rect. 3 23
236 143.46 radiation 10.0 1440 < th dose independent rect. 11 1
241 143.62 temperature 25.0 270 > th dose independent rect. 23 4
245 143.76 radiation 10.0 1440 < th dose independent rect. 14 1
247 143.78 radiation 10.0 1440 < th dose dependent rect. 11 4
250 143.80 temperature 25.0 270 > th dose dependent rect. 23 7
254 143.83 temperature 25.0 270 > th dose dependent rect. 23 4
258 143.91 precipitation 0.1 10 > th dose independent rect. 19 1
268 143.91 precipitation 0.1 10 > th dose dependent rect. 19 1
281 143.97 radiation 1.0 1440 > th dose independent rect. 15 1
290 144.07 humidity 90.0 1440 > th dose dependent rect. 14 1
315 144.34 humidity 90.0 1440 > th dose independent rect. 14 2
316 144.37 radiation 10.0 1440 < th dose independent rect. 11 19
317 144.38 radiation 10.0 1440 < th dose independent rect. 11 10
319 144.38 radiation 10.0 1440 < th dose independent rect. 11 14
355 144.46 radiation 10.0 1440 > th dose independent rect. 11 1
356 144.47 humidity 90.0 1440 < th dose independent rect. 11 6
368 144.59 precipitation 0.1 1440 > th dose independent rect. 19 1
369 144.61 temperature 25.0 1440 < th dose independent rect. 14 1
384 144.71 temperature 25.0 1440 > th dose independent rect. 14 1
389 144.72 humidity 50.0 4320 < th dose independent rect. 10 1
390 144.72 humidity 50.0 4320 < th dose dependent rect. 10 1
393 144.76 temperature 15.0 1440 > th dose independent rect. 4 16
396 144.78 humidity 90.0 720 > th dose dependent rect. 14 3
404 144.84 radiation 10.0 1440 > th dose independent rect. 11 4
407 144.88 wind 7.0 30 > th dose dependent rect. 19 1
451 144.91 precipitation 0.1 30 < th dose independent rect. 3 23
452 144.91 precipitation 0.1 30 < th dose dependent rect. 3 23
485 145.00 radiation 10.0 1440 < th dose dependent rect. 11 14
501 145.01 radiation 10.0 1440 < th dose dependent rect. 11 10
559 145.10 temperature 15.0 1440 > th dose independent rect. 4 6
600 145.27 atmosphere 1015.0 4320 > th dose dependent rect. 12 14
601 145.28 precipitation 0.1 10 > th dose independent sin 21 NA
604 145.29 radiation 10.0 1440 < th dose independent sin 18 NA
607 145.29 precipitation 0.1 10 > th dose dependent sin 21 NA
611 145.32 precipitation 0.1 10 < th dose independent sin 21 NA
612 145.32 precipitation 0.1 10 < th dose dependent sin 21 NA
637 145.37 atmosphere 1015.0 4320 > th dose dependent rect. 13 8
658 145.43 atmosphere 1015.0 4320 > th dose independent rect. 14 6
683 145.45 temperature 15.0 1440 > th dose independent rect. 2 18
689 145.46 atmosphere 1015.0 4320 < th dose independent rect. 15 5
695 145.47 atmosphere 1015.0 4320 > th dose dependent rect. 1 1
698 145.48 humidity 50.0 4320 < th dose dependent sin 8 NA
700 145.48 atmosphere 1015.0 4320 > th dose dependent rect. 23 3
729 145.50 temperature 15.0 1440 > th dose independent rect. 4 21
747 145.52 atmosphere 1015.0 4320 < th dose independent rect. 17 3
750 145.52 temperature 15.0 1440 > th dose independent rect. 4 12
751 145.52 precipitation 0.1 1440 > th dose dependent rect. 19 1
758 145.53 atmosphere 1015.0 4320 > th dose dependent sin 16 NA
785 145.57 temperature 20.0 4320 < th dose dependent rect. 22 4
853 145.62 humidity 90.0 1440 > th dose dependent rect. 10 6
879 145.63 temperature 30.0 30 < th dose independent rect. 3 23
925 145.66 temperature 20.0 4320 < th dose dependent rect. 1 1
927 145.66 temperature 20.0 4320 < th dose dependent rect. 22 18
961 145.68 temperature 20.0 4320 < th dose dependent rect. 9 19
966 145.69 atmosphere 1015.0 4320 > th dose dependent rect. 13 1
977 145.70 radiation 10.0 1440 < th dose dependent sin 19 NA