BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0405700 Os04g0405700|Os04g0405700
(661 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0405700 Aminotransferase, class IV family protein 890 0.0
Os12g0279800 92 1e-18
Os12g0278900 Peptidase C1A, papain family protein 85 2e-16
Os09g0565000 68 2e-11
>Os04g0405700 Aminotransferase, class IV family protein
Length = 661
Score = 890 bits (2300), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/661 (70%), Positives = 468/661 (70%)
Query: 1 MRPWERRGVGAEGGESVGREDTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
MRPWERRGVGAEGGESVGREDTD
Sbjct: 1 MRPWERRGVGAEGGESVGREDTDTNTNTTASSANASTSSSTAASGSSGARRNGAAAAAGE 60
Query: 61 XXXXXXLSTATINLSQEYTLAIHTSSYHEIWAKIHVXXXXXXXXXXXXXXXXXXXXXXXX 120
LSTATINLSQEYTLAIHTSSYHEIWAKIHV
Sbjct: 61 GWGRSSLSTATINLSQEYTLAIHTSSYHEIWAKIHVDGGDGQREGGVSGGGGGEEDEEDE 120
Query: 121 XRCTLAGVLQPEDAVVERALGDAPDTELTRLAADYLRSTHHXXXXXXXXXXXXXXXXXXY 180
RCTLAGVLQPEDAVVERALGDAPDTELTRLAADYLRSTHH Y
Sbjct: 121 DRCTLAGVLQPEDAVVERALGDAPDTELTRLAADYLRSTHHASLLCLSLRRALRRARALY 180
Query: 181 GPITDXXXXXXXXXXXXXXXRDCAFDAFLLFDQMPNPFPAPAAGFQGMHRSFVGLKNHXX 240
GPITD RDCAFDAFLLFDQMPNPFPAPAAGFQGMHRSFVGLKNH
Sbjct: 181 GPITDLLALIPHAPPLAAPHRDCAFDAFLLFDQMPNPFPAPAAGFQGMHRSFVGLKNHLD 240
Query: 241 XXXXXXXXXXXXXXCATRGSGICLIACATGAAIAGLVLATHAITVLLXXXXXXXXXXXXX 300
CATRGSGICLIACATGAAIAGLVLATHAITVLL
Sbjct: 241 LRLLRARRRRRLVRCATRGSGICLIACATGAAIAGLVLATHAITVLLAAAPACAASRGSC 300
Query: 301 XXXTASMKRLQQHMDRLDAAARGAYVLNNDVDTIERLVGRLHATVESDKXXXXXXXXXXX 360
TASMKRLQQHMDRLDAAARGAYVLNNDVDTIERLVGRLHATVESDK
Sbjct: 301 CPATASMKRLQQHMDRLDAAARGAYVLNNDVDTIERLVGRLHATVESDKLLVRLGLERGR 360
Query: 361 XXHHTIEEVVRQLRKNHPSLLRQLADLEEHICLYFAAVNRARLLLVKDELVYQFELFLAY 420
HHTIEEVVRQLRKNHPSLLRQLADLEEHICLYFAAVNRARLLLVKDELVYQFELFLAY
Sbjct: 361 GEHHTIEEVVRQLRKNHPSLLRQLADLEEHICLYFAAVNRARLLLVKDELVYQFELFLAY 420
Query: 421 HHHRYITMFVCAIHGYPELVGGSRITRSEIRNPIRRPLGCHGIHGRRPRRSSFGTEXXXX 480
HHHRYITMFVCAIHGYPELVGGSRITRSEIRNPIRRPLGCHGIHGRRPRRSSFGTE
Sbjct: 421 HHHRYITMFVCAIHGYPELVGGSRITRSEIRNPIRRPLGCHGIHGRRPRRSSFGTEPLPL 480
Query: 481 XXXXXXXXXCVGXXXXXXXXXXXXXXHHGEXXXXXXXXXXXXXXXXXXXXILPPNPSKMT 540
CVG HHGE ILPPNPSKMT
Sbjct: 481 RSSLSSALLCVGSLRTPRSPPPLPPPHHGEDLLASSAADSRRSLAVAAAAILPPNPSKMT 540
Query: 541 RNCTPLVTTQLLHVIDPADYIQYDEADVASEEAVWALYERWRDFYGAERSHDEMLRRFGM 600
RNCTPLVTTQLLHVIDPADYIQYDEADVASEEAVWALYERWRDFYGAERSHDEMLRRFGM
Sbjct: 541 RNCTPLVTTQLLHVIDPADYIQYDEADVASEEAVWALYERWRDFYGAERSHDEMLRRFGM 600
Query: 601 FKDKARHVLEFNKSGASFTKALKEGADLTLEENAKRLGIRPSQRPMVNNARFPLVNIHGI 660
FKDKARHVLEFNKSGASFTKALKEGADLTLEENAKRLGIRPSQRPMVNNARFPLVNIHGI
Sbjct: 601 FKDKARHVLEFNKSGASFTKALKEGADLTLEENAKRLGIRPSQRPMVNNARFPLVNIHGI 660
Query: 661 K 661
K
Sbjct: 661 K 661
>Os12g0279800
Length = 167
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 534 PNPSKMTRNCTPLVTTQLLHVIDPADYIQYDEADVASEEAVWALYERWRDFYGAERSHDE 593
P P+ ++ +C DPA YDE D+ SEEAVWALY+RW F+ ER D+
Sbjct: 61 PGPADLSPDCFDPEAPD-----DPATCFAYDEKDLESEEAVWALYQRWCSFHDIERDRDD 115
Query: 594 MLRRFGMFKDKARHVLEFNKSGASFTKALKEGADLTLEENAK 635
M+RRF FKD+A ++EFNKSG S+T L D+T +E ++
Sbjct: 116 MVRRFVYFKDRAHKIIEFNKSGKSYTWGLNIFGDMTPQEQSE 157
>Os12g0278900 Peptidase C1A, papain family protein
Length = 102
Score = 85.1 bits (209), Expect = 2e-16, Method: Composition-based stats.
Identities = 36/67 (53%), Positives = 45/67 (67%)
Query: 552 LHVIDPADYIQYDEADVASEEAVWALYERWRDFYGAERSHDEMLRRFGMFKDKARHVLEF 611
L + DPA +DE D S E VWALYERW F+ AE HD+M+R FG FKD+AR ++EF
Sbjct: 10 LPIDDPATCFAHDEKDFESNETVWALYERWCSFHSAEHDHDDMVRWFGCFKDRARRIIEF 69
Query: 612 NKSGASF 618
NKS +
Sbjct: 70 NKSSKPY 76
>Os09g0565000
Length = 357
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 59/110 (53%), Gaps = 8/110 (7%)
Query: 558 ADYIQYDEADVASEEAVWALYERWRDFYGAERSHDEML----RRFGMFKDKARHVLEFN- 612
AD + + D+ SEE++W+LY+RWR YGA S L RF +FK AR++ +FN
Sbjct: 6 ADDVPITDKDLESEESMWSLYQRWRHVYGAASSSPRDLADKGSRFEVFKKNARYIHDFNR 65
Query: 613 KSGASFTKALKEGADLTLEE-NAKRLGIRPSQRPMVNNARF--PLVNIHG 659
K G S+ L + ADLTLEE AK G P + N PL + G
Sbjct: 66 KKGMSYKLGLNKFADLTLEEFTAKYTGANPGPITGLKNGTGSPPLAAVAG 115
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.137 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,153,496
Number of extensions: 517646
Number of successful extensions: 1145
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1148
Number of HSP's successfully gapped: 6
Length of query: 661
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 554
Effective length of database: 11,448,903
Effective search space: 6342692262
Effective search space used: 6342692262
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 159 (65.9 bits)