Os04g0405700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Aminotransferase, class IV family protein.
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Os04g0405700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Aminotransferase, class IV family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.34 | 0.333 | 2.98 | -0.0471 | 0.101 | -0.765 | 0.0248 | 2.83 | 0.0336 | 8.37 | 50.26 | 8 | -- | -- |
| 53.06 | 0.339 | 2.98 | -0.0565 | 0.0987 | -0.336 | -0.131 | -- | 0.0262 | 8.43 | 52 | 6 | -- | -- |
| 50.02 | 0.329 | 2.98 | -0.0375 | 0.0994 | -0.726 | -- | 2.67 | 0.035 | 7.98 | 50.03 | 6 | -- | -- |
| 53.11 | 0.339 | 2.98 | -0.0604 | 0.0996 | -0.344 | -- | -- | 0.0256 | 8.1 | 52 | 6 | -- | -- |
| 50.56 | 0.331 | 2.98 | -0.04 | -- | -0.727 | -- | 2.68 | 0.0361 | -- | 50.04 | 6 | -- | -- |
| 54.48 | 0.346 | 2.98 | -0.0531 | 0.103 | -- | -0.168 | -- | 0.0131 | 9.53 | -- | -- | -- | -- |
| 54.58 | 0.346 | 2.98 | -0.0595 | 0.105 | -- | -- | -- | 0.0127 | 9.37 | -- | -- | -- | -- |
| 53.66 | 0.341 | 2.98 | -0.0601 | -- | -0.345 | -- | -- | 0.0276 | -- | 51.88 | 6 | -- | -- |
| 53.21 | 0.34 | 2.98 | -- | 0.0999 | -0.343 | -- | -- | 0.033 | 8.11 | 51.55 | 6 | -- | -- |
| 55.22 | 0.347 | 2.98 | -0.0601 | -- | -- | -- | -- | 0.0131 | -- | -- | -- | -- | -- |
| 54.67 | 0.346 | 2.98 | -- | 0.105 | -- | -- | -- | 0.0193 | 9.41 | -- | -- | -- | -- |
| 53.76 | 0.341 | 2.98 | -- | -- | -0.345 | -- | -- | 0.0343 | -- | 51.49 | 6 | -- | -- |
| 55.32 | 0.347 | 2.98 | -- | -- | -- | -- | -- | 0.0198 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.05 | humidity | 70 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 2 | 45.12 | humidity | 70 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 3 | 45.17 | humidity | 70 | 4320 | > th | dose independent | rect. | 20 | 6 |
| 18 | 45.40 | humidity | 70 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 28 | 45.40 | humidity | 70 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 40 | 45.60 | humidity | 50 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 44 | 46.29 | wind | 9 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 52 | 47.20 | radiation | 1 | 270 | < th | dose independent | rect. | 8 | 1 |
| 53 | 47.20 | radiation | 1 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 55 | 47.34 | atmosphere | 1010 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 119 | 47.65 | wind | 9 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 166 | 47.86 | atmosphere | 1010 | 30 | > th | dose dependent | sin | 23 | NA |
| 556 | 48.54 | humidity | 50 | 10 | > th | dose independent | sin | 7 | NA |
| 564 | 48.66 | wind | 9 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 747 | 49.74 | humidity | 70 | 4320 | > th | dose independent | rect. | 4 | 3 |
| 749 | 49.76 | humidity | 70 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 759 | 49.77 | humidity | 70 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 782 | 49.81 | humidity | 60 | 270 | < th | dose independent | rect. | 10 | 1 |
| 790 | 49.83 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 845 | 49.83 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 898 | 49.85 | humidity | 50 | 10 | > th | dose independent | rect. | 3 | 23 |
| 902 | 49.87 | humidity | 60 | 720 | > th | dose independent | rect. | 3 | 8 |
| 914 | 49.93 | humidity | 50 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 921 | 49.99 | humidity | 70 | 4320 | < th | dose dependent | rect. | 19 | 14 |
| 944 | 50.18 | humidity | 70 | 4320 | > th | dose independent | rect. | 24 | 7 |
| 952 | 50.22 | temperature | 25 | 10 | < th | dose independent | rect. | 12 | 1 |