BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0405700 Os04g0405700|Os04g0405700
(661 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G19330.1 | chr3:6699423-6700772 FORWARD LENGTH=383 130 3e-30
AT3G19250.1 | chr3:6666842-6668008 REVERSE LENGTH=361 106 4e-23
AT3G49070.1 | chr3:18192479-18193729 REVERSE LENGTH=417 70 4e-12
AT5G50260.1 | chr5:20455605-20456862 FORWARD LENGTH=362 65 2e-10
AT3G48350.1 | chr3:17905752-17907370 FORWARD LENGTH=365 58 2e-08
AT3G48340.1 | chr3:17897739-17899074 FORWARD LENGTH=362 56 7e-08
AT1G20180.1 | chr1:6996354-6997779 FORWARD LENGTH=391 55 1e-07
AT1G20850.1 | chr1:7252208-7253537 FORWARD LENGTH=357 49 8e-06
>AT3G19330.1 | chr3:6699423-6700772 FORWARD LENGTH=383
Length = 382
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 103/346 (29%), Positives = 150/346 (43%), Gaps = 18/346 (5%)
Query: 67 LSTATINLSQEYTLAIHTSSYHEIWAKIHVXXXXXXXXXXXXXXXXXXXXXXXXXRCTLA 126
+S+ T NLS+E A T SYH++ +++HV L+
Sbjct: 40 ISSPTFNLSRELAHAFQTPSYHDVRSRVHV---------VVDLTQIHHRLIQPDIELLLS 90
Query: 127 GVLQPEDAVVERALGDAPDTELTRLAADYLR-STHHXXXXXXXXXXXXXXXXXXYGPITD 185
VLQP V+ A+ T LT L + Y + S Y P+ D
Sbjct: 91 QVLQPNKECVQEAIRHVKQTTLTNLVSTYFQHSEDATRLCLNLYQNVHSARHHLYTPLLD 150
Query: 186 XXXXXXXXXXXXXXXRDC--AFDAFLLFDQMPNPFPAPAA-GFQGMHRSFVGLKNHXXXX 242
C AFD FL D NPF +P + F+ F LK++
Sbjct: 151 LFNIFPGDSLPAIDESLCDLAFDVFLKLDTFENPFSSPESYSFRDTQLCFSQLKHNLDRR 210
Query: 243 XXXXXXXXXXXXCATRGSGICLIACATGAAIAGLVLATHAITVLLXXXXXXXXXXXXXXX 302
AT GS +CL+A A + +V+A+HA+ +LL
Sbjct: 211 LRKSRSRVRLIHHATAGSSLCLVAAVVAVAASAVVIASHALPILLVVAGPLCSPYLPHSF 270
Query: 303 XTASMKRLQQHMDRLDAAARGAYVLNNDVDTIERLVGRLHATVESDKXXXXXXXXXXXXX 362
+ + Q L+AA++G +VLN D+DTI+RLV RLH +E DK
Sbjct: 271 KRKELTNICQ----LNAASKGTFVLNKDLDTIDRLVSRLHTGIEYDKFLIRLGLERGRDV 326
Query: 363 HHTIEEVVRQLRKNHPSLLRQLADLEEHICLYFAAVNRARLLLVKD 408
H+I+E+++ LRK+H L QL DLE+HICL+F VN+AR LL+ +
Sbjct: 327 -HSIQEILKLLRKSHLPLTHQLKDLEDHICLWFTNVNKARSLLLTE 371
>AT3G19250.1 | chr3:6666842-6668008 REVERSE LENGTH=361
Length = 360
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 97/347 (27%), Positives = 137/347 (39%), Gaps = 28/347 (8%)
Query: 70 ATINLSQEYTLAIHTSSYHEIWAKIHVXXXXXXXXXXXXXXXXXXXXXXXXXRCTLAGVL 129
+T NLS E A T SYH+I +++ V L+ L
Sbjct: 32 STFNLSHELAHAFQTPSYHDIRSRLLVIDPTQENLELF-----------------LSQEL 74
Query: 130 QPEDAVVERALG--DAPDTELTRLAADYLR-STHHXXXXXXXXXXXXXXXXXXYGPITDX 186
+P + V+ AL A T LT L + Y + S Y P+ D
Sbjct: 75 RPNNESVQEALSLRHAKQTTLTNLVSTYFQHSEDATRFCLNLYQNVHSARCHLYTPLLDL 134
Query: 187 XXXXXXXXXXXXXXRDC--AFDAFLLFDQMPNPFPAPAA-GFQGMHRSFVGLKNHXXXXX 243
C AFD FL D NPF +P + FQ F L +
Sbjct: 135 FNIFPRDSHSAIDESFCNLAFDVFLKLDTFENPFASPESHSFQDTQLCFYQLADKLDTRI 194
Query: 244 XXXXXXXXXXXCATRGSGICLIACATGAAIAGLVLATHAITVLLXXXXXXXXXXXXXXXX 303
AT GS +CL+ A + +A HA+ +L
Sbjct: 195 RKSKSRVRLLHHATAGSALCLVTAVVVVAASAAFIAYHALPTILVVAGPLCTPYLPHSFK 254
Query: 304 TASMKRLQQHMDRLDAAARGAYVLNNDVDTIERLVGRLHATVESDKXXXXXXXXXXXXXH 363
+ + Q L+ AA+G + LN D+DTI+RLV RLH V++DK +
Sbjct: 255 KKELSNIFQ----LNVAAKGTFALNKDLDTIDRLVSRLHTGVKNDKLLIRLGLERGRDVY 310
Query: 364 HTIEEVVRQLRKNHPSLLRQLADLEEHICLYFAAVNRARLLLVKDEL 410
TI E V+QLRK+H + QL L +HIC +F VN++R LL+K+ L
Sbjct: 311 -TIPEFVKQLRKSHVNHTHQLEVLVDHICRWFTNVNKSRSLLLKEIL 356
>AT3G49070.1 | chr3:18192479-18193729 REVERSE LENGTH=417
Length = 416
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 57/102 (55%)
Query: 309 RLQQHMDRLDAAARGAYVLNNDVDTIERLVGRLHATVESDKXXXXXXXXXXXXXHHTIEE 368
+L + RLD AA+G Y+L+ D+DTI RLV R++ V + EE
Sbjct: 297 KLTKTAARLDVAAKGTYILSRDLDTISRLVTRINDEVNHVRAMAEFWVGRGSGRVRGSEE 356
Query: 369 VVRQLRKNHPSLLRQLADLEEHICLYFAAVNRARLLLVKDEL 410
V R+L++ S +L +LEEHI L F +NRAR LLVK+ L
Sbjct: 357 VARELKRCEESFSEELDELEEHIYLCFMTINRARNLLVKEIL 398
>AT5G50260.1 | chr5:20455605-20456862 FORWARD LENGTH=362
Length = 361
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%)
Query: 551 LLHVIDPADYIQYDEADVASEEAVWALYERWRDFYGAERSHDEMLRRFGMFKDKARHVLE 610
+L V++ + + DV SE ++W LYERWR + RS +E +RF +FK +H+ E
Sbjct: 11 MLMVLETTKGLDFHNKDVESENSLWELYERWRSHHTVARSLEEKAKRFNVFKHNVKHIHE 70
Query: 611 FNKSGASFTKALKEGADLTLEE 632
NK S+ L + D+T EE
Sbjct: 71 TNKKDKSYKLKLNKFGDMTSEE 92
>AT3G48350.1 | chr3:17905752-17907370 FORWARD LENGTH=365
Length = 364
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%)
Query: 546 LVTTQLLHVIDPADYIQYDEADVASEEAVWALYERWRDFYGAERSHDEMLRRFGMFKDKA 605
+V L ++ + +DE ++ +EE VW LYERWR + R+ E ++RF +F+
Sbjct: 6 IVLISFLSLLQASKGFDFDEKELETEENVWKLYERWRGHHSVSRASHEAIKRFNVFRHNV 65
Query: 606 RHVLEFNKSGASFTKALKEGADLTLEE 632
HV NK + + AD+T E
Sbjct: 66 LHVHRTNKKNKPYKLKINRFADITHHE 92
>AT3G48340.1 | chr3:17897739-17899074 FORWARD LENGTH=362
Length = 361
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 552 LHVIDPADYIQYDEADVASEEAVWALYERWRDFYGAERSHDEMLRRFGMFKDKARHVLEF 611
L ++ A YD+ ++ SEE + LY+RWR + RS +E +RF +F+ HV
Sbjct: 12 LVILQTACGFDYDDKEIESEEGLSTLYDRWRSHHSVPRSLNEREKRFNVFRHNVMHVHNT 71
Query: 612 NKSGASFTKALKEGADLTLEE 632
NK S+ L + ADLT+ E
Sbjct: 72 NKKNRSYKLKLNKFADLTINE 92
>AT1G20180.1 | chr1:6996354-6997779 FORWARD LENGTH=391
Length = 390
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 310 LQQHMDRLDAAARGAYVLNNDVDTIERLVGRLHATVESDKXXXXXXXXXXXXXHHTIEEV 369
L++ ++D AA+G ++L ND+DT+ RL GRL +E K ++E
Sbjct: 288 LEKLGTQIDIAAKGMFILINDLDTLSRLAGRLCDEIEHRKTVAAMCAKSRKI--EVLKEA 345
Query: 370 VRQLRKNHPSLLRQLADLEEHICLYFAAVNRARLLLV 406
+R+ + QL +LEEH+ L F +NR+R L++
Sbjct: 346 LREFNGHEEKFSDQLQELEEHLYLCFHTINRSRRLVL 382
>AT1G20850.1 | chr1:7252208-7253537 FORWARD LENGTH=357
Length = 356
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 561 IQYDEADVASEEAVWALYERW-RDFYGAERSHDEMLRRFGMFKDKARHVLEFNKSGASFT 619
+ Y D+ S + + L+E W +F A + +E RF +FKD +H+ E NK G S+
Sbjct: 34 VGYSPEDLESHDKLIELFENWISNFEKAYETVEEKFLRFEVFKDNLKHIDETNKKGKSYW 93
Query: 620 KALKEGADLTLEENAKR-LGIR 640
L E ADL+ EE K LG++
Sbjct: 94 LGLNEFADLSHEEFKKMYLGLK 115
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.137 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,822,362
Number of extensions: 308424
Number of successful extensions: 683
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 680
Number of HSP's successfully gapped: 8
Length of query: 661
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 556
Effective length of database: 8,227,889
Effective search space: 4574706284
Effective search space used: 4574706284
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 115 (48.9 bits)