Os12g0278900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase C1A, papain family protein.
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Os12g0278900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase C1A, papain family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 118.9 | 0.512 | 8.37 | 0.352 | 0.421 | 0.78 | -0.134 | 1.85 | -0.00118 | 15.8 | 59.55 | 1383 | -- | -- |
| 124.09 | 0.519 | 8.37 | 0.563 | 0.419 | 0.866 | -0.0933 | -- | 0.0281 | 15.7 | 58 | 1384 | -- | -- |
| 118.94 | 0.508 | 8.37 | 0.35 | 0.423 | 0.777 | -- | 1.85 | -0.00438 | 15.9 | 59.66 | 1384 | -- | -- |
| 124.08 | 0.519 | 8.36 | 0.57 | 0.426 | 0.88 | -- | -- | 0.0352 | 15.8 | 58 | 1382 | -- | -- |
| 127.05 | 0.525 | 8.37 | 0.357 | -- | 0.915 | -- | 1.75 | 0.00092 | -- | 59.31 | 1285 | -- | -- |
| 141.73 | 0.558 | 8.38 | 0.536 | 0.499 | -- | 0.0731 | -- | -0.0209 | 15.8 | -- | -- | -- | -- |
| 141.74 | 0.558 | 8.38 | 0.537 | 0.498 | -- | -- | -- | -0.0205 | 15.7 | -- | -- | -- | -- |
| 131.42 | 0.534 | 8.37 | 0.576 | -- | 1.01 | -- | -- | 0.0129 | -- | 52 | 1259 | -- | -- |
| 132.26 | 0.536 | 8.37 | -- | 0.445 | 0.968 | -- | -- | 0.0163 | 15.8 | 64.6 | 1405 | -- | -- |
| 155.49 | 0.583 | 8.38 | 0.516 | -- | -- | -- | -- | -0.0338 | -- | -- | -- | -- | -- |
| 149.34 | 0.572 | 8.39 | -- | 0.488 | -- | -- | -- | -0.0803 | 15.7 | -- | -- | -- | -- |
| 138.64 | 0.548 | 8.35 | -- | -- | 1.13 | -- | -- | 0.0756 | -- | 63.81 | 2663 | -- | -- |
| 162.51 | 0.595 | 8.39 | -- | -- | -- | -- | -- | -0.091 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 111.44 | radiation | 40 | 1440 | > th | dose dependent | rect. | 14 | 20 |
| 2 | 111.82 | temperature | 25 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 14 | 112.24 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 16 | 112.27 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 23 | 112.48 | temperature | 25 | 14400 | > th | dose dependent | rect. | 23 | 16 |
| 78 | 112.88 | temperature | 25 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 85 | 112.92 | temperature | 25 | 14400 | > th | dose dependent | sin | 4 | NA |
| 97 | 112.98 | wind | 5 | 43200 | < th | dose dependent | rect. | 24 | 5 |
| 122 | 113.12 | radiation | 40 | 1440 | > th | dose dependent | sin | 12 | NA |
| 179 | 113.42 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 183 | 113.44 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 185 | 113.44 | wind | 1 | 43200 | > th | dose dependent | rect. | 3 | 4 |
| 187 | 113.45 | temperature | 25 | 14400 | > th | dose independent | rect. | 24 | 14 |
| 189 | 113.46 | temperature | 25 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 199 | 113.50 | wind | 5 | 43200 | < th | dose dependent | rect. | 3 | 3 |
| 203 | 113.51 | wind | 1 | 43200 | > th | dose dependent | rect. | 24 | 7 |
| 240 | 113.62 | temperature | 30 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 244 | 113.63 | temperature | 30 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 257 | 113.66 | radiation | 40 | 1440 | < th | dose independent | rect. | 14 | 19 |
| 262 | 113.69 | temperature | 25 | 14400 | > th | dose independent | rect. | 1 | 9 |
| 265 | 113.69 | wind | 9 | 43200 | < th | dose dependent | rect. | 3 | 4 |
| 282 | 113.72 | temperature | 25 | 14400 | > th | dose dependent | rect. | 8 | 20 |
| 285 | 113.73 | temperature | 25 | 14400 | > th | dose dependent | rect. | 9 | 18 |
| 300 | 113.75 | temperature | 25 | 14400 | > th | dose independent | sin | 5 | NA |
| 319 | 113.77 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 332 | 113.78 | temperature | 25 | 14400 | < th | dose independent | rect. | 24 | 13 |
| 340 | 113.78 | temperature | 25 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 378 | 113.82 | wind | 9 | 43200 | < th | dose dependent | rect. | 24 | 6 |
| 404 | 113.85 | humidity | 70 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 423 | 113.87 | temperature | 25 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 449 | 113.91 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 4 |
| 507 | 114.01 | temperature | 25 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 538 | 114.06 | temperature | 25 | 14400 | < th | dose independent | sin | 5 | NA |
| 550 | 114.08 | temperature | 30 | 14400 | > th | dose independent | rect. | 11 | 4 |
| 569 | 114.11 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 3 |
| 570 | 114.11 | temperature | 25 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 584 | 114.14 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 3 |
| 646 | 114.25 | humidity | 70 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 652 | 114.26 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 681 | 114.30 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 13 |
| 699 | 114.34 | temperature | 30 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 731 | 114.40 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 735 | 114.41 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 739 | 114.41 | radiation | 40 | 1440 | > th | dose independent | rect. | 14 | 19 |
| 752 | 114.44 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 874 | 114.63 | wind | 3 | 43200 | < th | dose independent | rect. | 24 | 5 |
| 881 | 114.63 | temperature | 30 | 14400 | < th | dose dependent | rect. | 9 | 6 |
| 882 | 114.63 | radiation | 40 | 4320 | < th | dose dependent | rect. | 18 | 9 |
| 901 | 114.66 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 907 | 114.68 | humidity | 80 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 956 | 114.75 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 986 | 114.78 | temperature | 30 | 14400 | < th | dose dependent | rect. | 9 | 1 |