BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0278900 Os12g0278900|AK106816
         (102 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G48350.1  | chr3:17905752-17907370 FORWARD LENGTH=365           58   1e-09
AT5G50260.1  | chr5:20455605-20456862 FORWARD LENGTH=362           56   3e-09
AT3G48340.1  | chr3:17897739-17899074 FORWARD LENGTH=362           49   7e-07

>AT3G48350.1 | chr3:17905752-17907370 FORWARD LENGTH=365
          Length = 364

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 9/98 (9%)

Query: 3  LSLFFL----YLPIDDPATCFAHDEKDFESNETVWALYERWCSFHSAEHDHDDMVRWFGC 58
          + LFF+    +L +   +  F  DEK+ E+ E VW LYERW   HS      + ++ F  
Sbjct: 1  MKLFFIVLISFLSLLQASKGFDFDEKELETEENVWKLYERWRGHHSVSRASHEAIKRFNV 60

Query: 59 FKDRARRIIEFNKSSKPYKWGVGAWGLNIFDDMTPEEL 96
          F+     +   NK +KPYK  +     N F D+T  E 
Sbjct: 61 FRHNVLHVHRTNKKNKPYKLKI-----NRFADITHHEF 93



>AT5G50260.1 | chr5:20455605-20456862 FORWARD LENGTH=362
          Length = 361

 Score = 56.2 bits (134), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 37/73 (50%), Gaps = 5/73 (6%)

Query: 24 KDFESNETVWALYERWCSFHSAEHDHDDMVRWFGCFKDRARRIIEFNKSSKPYKWGVGAW 83
          KD ES  ++W LYERW S H+     ++  + F  FK   + I E NK  K YK      
Sbjct: 26 KDVESENSLWELYERWRSHHTVARSLEEKAKRFNVFKHNVKHIHETNKKDKSYK-----L 80

Query: 84 GLNIFDDMTPEEL 96
           LN F DMT EE 
Sbjct: 81 KLNKFGDMTSEEF 93



>AT3G48340.1 | chr3:17897739-17899074 FORWARD LENGTH=362
          Length = 361

 Score = 48.5 bits (114), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 5/93 (5%)

Query: 3  LSLFFLYLPIDDPATCFAHDEKDFESNETVWALYERWCSFHSAEHDHDDMVRWFGCFKDR 62
          L +F   L I   A  F +D+K+ ES E +  LY+RW S HS     ++  + F  F+  
Sbjct: 5  LLIFLFSLVILQTACGFDYDDKEIESEEGLSTLYDRWRSHHSVPRSLNEREKRFNVFRHN 64

Query: 63 ARRIIEFNKSSKPYKWGVGAWGLNIFDDMTPEE 95
             +   NK ++ YK       LN F D+T  E
Sbjct: 65 VMHVHNTNKKNRSYK-----LKLNKFADLTINE 92



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.140    0.491 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,681,479
Number of extensions: 106529
Number of successful extensions: 302
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 3
Length of query: 102
Length of database: 11,106,569
Length adjustment: 72
Effective length of query: 30
Effective length of database: 9,132,617
Effective search space: 273978510
Effective search space used: 273978510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)